Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CHMP1AQ9HD42 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CHMP1AQ9HD42 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC15.19■□□□□ 0.02
CHMP1AQ9HD42 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CHMP1AQ9HD42 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CHMP1AQ9HD42 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC15.18■□□□□ 0.02
CHMP1AQ9HD42 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
CHMP1AQ9HD42 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC15.18■□□□□ 0.02
CHMP1AQ9HD42 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
CHMP1AQ9HD42 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC15.18■□□□□ 0.02
CHMP1AQ9HD42 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CHMP1AQ9HD42 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CHMP1AQ9HD42 HS6ST3-201ENST00000376705 7804 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CHMP1AQ9HD42 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC15.18■□□□□ 0.02
CHMP1AQ9HD42 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC15.18■□□□□ 0.02
CHMP1AQ9HD42 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC15.18■□□□□ 0.02
CHMP1AQ9HD42 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
CHMP1AQ9HD42 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CHMP1AQ9HD42 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CHMP1AQ9HD42 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CHMP1AQ9HD42 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CHMP1AQ9HD42 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC15.18■□□□□ 0.02
CHMP1AQ9HD42 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
CHMP1AQ9HD42 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CHMP1AQ9HD42 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC15.18■□□□□ 0.02
CHMP1AQ9HD42 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CHMP1AQ9HD42 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CHMP1AQ9HD42 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CHMP1AQ9HD42 ILF2-202ENST00000368681 726 ntTSL 2 BASIC15.18■□□□□ 0.02
CHMP1AQ9HD42 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC15.18■□□□□ 0.02
CHMP1AQ9HD42 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CHMP1AQ9HD42 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC15.18■□□□□ 0.02
CHMP1AQ9HD42 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC15.18■□□□□ 0.02
CHMP1AQ9HD42 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC15.18■□□□□ 0.02
CHMP1AQ9HD42 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC15.18■□□□□ 0.02
CHMP1AQ9HD42 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC15.18■□□□□ 0.02
CHMP1AQ9HD42 Z99916.2-201ENST00000604037 246 ntBASIC15.18■□□□□ 0.02
CHMP1AQ9HD42 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
CHMP1AQ9HD42 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CHMP1AQ9HD42 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC15.18■□□□□ 0.02
CHMP1AQ9HD42 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CHMP1AQ9HD42 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CHMP1AQ9HD42 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CHMP1AQ9HD42 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC15.18■□□□□ 0.02
CHMP1AQ9HD42 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CHMP1AQ9HD42 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CHMP1AQ9HD42 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CHMP1AQ9HD42 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
CHMP1AQ9HD42 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC15.17■□□□□ 0.02
CHMP1AQ9HD42 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC15.17■□□□□ 0.02
CHMP1AQ9HD42 AC092338.2-201ENST00000568827 1415 ntBASIC15.17■□□□□ 0.02
CHMP1AQ9HD42 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CHMP1AQ9HD42 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC15.17■□□□□ 0.02
CHMP1AQ9HD42 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC15.17■□□□□ 0.02
CHMP1AQ9HD42 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC15.17■□□□□ 0.02
CHMP1AQ9HD42 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
CHMP1AQ9HD42 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CHMP1AQ9HD42 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CHMP1AQ9HD42 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC15.17■□□□□ 0.02
CHMP1AQ9HD42 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CHMP1AQ9HD42 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CHMP1AQ9HD42 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC15.17■□□□□ 0.02
CHMP1AQ9HD42 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CHMP1AQ9HD42 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CHMP1AQ9HD42 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
CHMP1AQ9HD42 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
CHMP1AQ9HD42 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CHMP1AQ9HD42 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CHMP1AQ9HD42 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CHMP1AQ9HD42 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC15.17■□□□□ 0.02
CHMP1AQ9HD42 PRR31-201ENST00000371629 978 ntTSL 2 BASIC15.17■□□□□ 0.02
CHMP1AQ9HD42 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CHMP1AQ9HD42 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CHMP1AQ9HD42 TSPY7P-201ENST00000431358 1114 ntBASIC15.17■□□□□ 0.02
CHMP1AQ9HD42 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC15.17■□□□□ 0.02
CHMP1AQ9HD42 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CHMP1AQ9HD42 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC15.17■□□□□ 0.02
CHMP1AQ9HD42 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC15.17■□□□□ 0.02
CHMP1AQ9HD42 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC15.17■□□□□ 0.02
CHMP1AQ9HD42 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
CHMP1AQ9HD42 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC15.17■□□□□ 0.02
CHMP1AQ9HD42 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC15.17■□□□□ 0.02
CHMP1AQ9HD42 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CHMP1AQ9HD42 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CHMP1AQ9HD42 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CHMP1AQ9HD42 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
CHMP1AQ9HD42 WSCD1-201ENST00000317744 5819 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CHMP1AQ9HD42 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC15.17■□□□□ 0.02
CHMP1AQ9HD42 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC15.17■□□□□ 0.02
CHMP1AQ9HD42 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC15.17■□□□□ 0.02
CHMP1AQ9HD42 SARM1-208ENST00000585482 10309 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
CHMP1AQ9HD42 AC022898.2-201ENST00000616822 1312 ntBASIC15.17■□□□□ 0.02
CHMP1AQ9HD42 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC15.16■□□□□ 0.02
CHMP1AQ9HD42 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
CHMP1AQ9HD42 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC15.16■□□□□ 0.02
CHMP1AQ9HD42 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CHMP1AQ9HD42 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CHMP1AQ9HD42 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC15.16■□□□□ 0.02
CHMP1AQ9HD42 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CHMP1AQ9HD42 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms