Protein–RNA interactions for Protein: Q99743

NPAS2, Neuronal PAS domain-containing protein 2, humanhuman

Predictions only

Length 824 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS2Q99743 AC112497.1-201ENST00000624824 639 ntBASIC17.24■□□□□ 0.35
NPAS2Q99743 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC17.24■□□□□ 0.35
NPAS2Q99743 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
NPAS2Q99743 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
NPAS2Q99743 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
NPAS2Q99743 IER3-202ENST00000376377 1350 ntBASIC17.24■□□□□ 0.35
NPAS2Q99743 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC17.24■□□□□ 0.35
NPAS2Q99743 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC17.24■□□□□ 0.35
NPAS2Q99743 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC17.24■□□□□ 0.35
NPAS2Q99743 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
NPAS2Q99743 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC17.23■□□□□ 0.35
NPAS2Q99743 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC17.23■□□□□ 0.35
NPAS2Q99743 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC17.23■□□□□ 0.35
NPAS2Q99743 AC132938.6-201ENST00000623828 1655 ntBASIC17.23■□□□□ 0.35
NPAS2Q99743 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
NPAS2Q99743 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC17.23■□□□□ 0.35
NPAS2Q99743 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC17.23■□□□□ 0.35
NPAS2Q99743 HOXB1-202ENST00000577092 1414 ntBASIC17.23■□□□□ 0.35
NPAS2Q99743 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
NPAS2Q99743 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
NPAS2Q99743 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
NPAS2Q99743 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
NPAS2Q99743 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
NPAS2Q99743 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
NPAS2Q99743 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC17.23■□□□□ 0.35
NPAS2Q99743 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
NPAS2Q99743 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
NPAS2Q99743 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC17.23■□□□□ 0.35
NPAS2Q99743 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
NPAS2Q99743 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
NPAS2Q99743 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
NPAS2Q99743 FXN-203ENST00000396366 922 ntTSL 2 BASIC17.23■□□□□ 0.35
NPAS2Q99743 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
NPAS2Q99743 AC079602.3-201ENST00000623931 403 ntBASIC17.23■□□□□ 0.35
NPAS2Q99743 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
NPAS2Q99743 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC17.23■□□□□ 0.35
NPAS2Q99743 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC17.23■□□□□ 0.35
NPAS2Q99743 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
NPAS2Q99743 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC17.23■□□□□ 0.35
NPAS2Q99743 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
NPAS2Q99743 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
NPAS2Q99743 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
NPAS2Q99743 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
NPAS2Q99743 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC17.22■□□□□ 0.35
NPAS2Q99743 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC17.22■□□□□ 0.35
NPAS2Q99743 LINC00304-203ENST00000565008 1864 ntBASIC17.22■□□□□ 0.35
NPAS2Q99743 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC17.22■□□□□ 0.35
NPAS2Q99743 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
NPAS2Q99743 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
NPAS2Q99743 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
NPAS2Q99743 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
NPAS2Q99743 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC17.22■□□□□ 0.35
NPAS2Q99743 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
NPAS2Q99743 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
NPAS2Q99743 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
NPAS2Q99743 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
NPAS2Q99743 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC17.22■□□□□ 0.35
NPAS2Q99743 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC17.22■□□□□ 0.35
NPAS2Q99743 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC17.22■□□□□ 0.35
NPAS2Q99743 DUTP2-201ENST00000519164 463 ntBASIC17.22■□□□□ 0.35
NPAS2Q99743 VENTXP5-201ENST00000523979 775 ntBASIC17.22■□□□□ 0.35
NPAS2Q99743 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC17.22■□□□□ 0.35
NPAS2Q99743 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC17.22■□□□□ 0.35
NPAS2Q99743 CBFB-203ENST00000561924 584 ntTSL 5 BASIC17.22■□□□□ 0.35
NPAS2Q99743 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC17.22■□□□□ 0.35
NPAS2Q99743 USF2-205ENST00000594064 1179 ntTSL 2 BASIC17.22■□□□□ 0.35
NPAS2Q99743 AL157888.1-201ENST00000631930 593 ntBASIC17.22■□□□□ 0.35
NPAS2Q99743 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
NPAS2Q99743 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
NPAS2Q99743 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC17.22■□□□□ 0.35
NPAS2Q99743 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
NPAS2Q99743 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
NPAS2Q99743 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC17.22■□□□□ 0.35
NPAS2Q99743 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
NPAS2Q99743 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC17.22■□□□□ 0.35
NPAS2Q99743 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
NPAS2Q99743 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
NPAS2Q99743 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
NPAS2Q99743 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
NPAS2Q99743 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
NPAS2Q99743 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC17.21■□□□□ 0.35
NPAS2Q99743 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC17.21■□□□□ 0.35
NPAS2Q99743 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC17.21■□□□□ 0.35
NPAS2Q99743 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC17.21■□□□□ 0.35
NPAS2Q99743 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC17.21■□□□□ 0.35
NPAS2Q99743 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
NPAS2Q99743 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
NPAS2Q99743 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
NPAS2Q99743 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
NPAS2Q99743 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC17.21■□□□□ 0.35
NPAS2Q99743 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
NPAS2Q99743 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
NPAS2Q99743 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC17.21■□□□□ 0.35
NPAS2Q99743 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC17.21■□□□□ 0.35
NPAS2Q99743 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
NPAS2Q99743 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
NPAS2Q99743 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
NPAS2Q99743 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
NPAS2Q99743 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC17.21■□□□□ 0.35
NPAS2Q99743 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms