Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC18.17■□□□□ 0.5
CDX2Q99626 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC18.17■□□□□ 0.5
CDX2Q99626 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC18.17■□□□□ 0.5
CDX2Q99626 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CDX2Q99626 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CDX2Q99626 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CDX2Q99626 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC18.17■□□□□ 0.5
CDX2Q99626 AC100803.2-201ENST00000562459 1963 ntBASIC18.17■□□□□ 0.5
CDX2Q99626 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC18.17■□□□□ 0.5
CDX2Q99626 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC18.16■□□□□ 0.5
CDX2Q99626 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC18.16■□□□□ 0.5
CDX2Q99626 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CDX2Q99626 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CDX2Q99626 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CDX2Q99626 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
CDX2Q99626 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CDX2Q99626 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
CDX2Q99626 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CDX2Q99626 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
CDX2Q99626 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CDX2Q99626 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CDX2Q99626 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CDX2Q99626 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CDX2Q99626 AC009477.1-201ENST00000452936 217 ntBASIC18.16■□□□□ 0.5
CDX2Q99626 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC18.16■□□□□ 0.5
CDX2Q99626 STOM-203ENST00000538954 1257 ntTSL 5 BASIC18.16■□□□□ 0.5
CDX2Q99626 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC18.16■□□□□ 0.5
CDX2Q99626 APOC4-201ENST00000591600 348 ntTSL 3 BASIC18.16■□□□□ 0.5
CDX2Q99626 AC008738.7-201ENST00000609744 511 ntBASIC18.16■□□□□ 0.5
CDX2Q99626 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CDX2Q99626 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CDX2Q99626 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CDX2Q99626 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CDX2Q99626 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CDX2Q99626 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC18.16■□□□□ 0.5
CDX2Q99626 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC18.15■□□□□ 0.5
CDX2Q99626 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC18.15■□□□□ 0.5
CDX2Q99626 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC18.15■□□□□ 0.5
CDX2Q99626 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC18.15■□□□□ 0.5
CDX2Q99626 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CDX2Q99626 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CDX2Q99626 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CDX2Q99626 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
CDX2Q99626 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC18.15■□□□□ 0.5
CDX2Q99626 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC18.15■□□□□ 0.5
CDX2Q99626 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC18.15■□□□□ 0.5
CDX2Q99626 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CDX2Q99626 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CDX2Q99626 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC18.15■□□□□ 0.5
CDX2Q99626 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CDX2Q99626 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC18.15■□□□□ 0.5
CDX2Q99626 AC009093.8-202ENST00000562902 677 ntTSL 2 BASIC18.15■□□□□ 0.5
CDX2Q99626 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC18.15■□□□□ 0.5
CDX2Q99626 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC18.15■□□□□ 0.5
CDX2Q99626 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CDX2Q99626 AL512343.1-201ENST00000605837 169 ntBASIC18.15■□□□□ 0.5
CDX2Q99626 AC099568.2-201ENST00000609194 695 ntBASIC18.15■□□□□ 0.5
CDX2Q99626 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC18.15■□□□□ 0.5
CDX2Q99626 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CDX2Q99626 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC18.15■□□□□ 0.5
CDX2Q99626 GRAMD4P3-201ENST00000621665 1669 ntBASIC18.15■□□□□ 0.5
CDX2Q99626 KRT8P44-201ENST00000441609 1350 ntBASIC18.15■□□□□ 0.5
CDX2Q99626 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC18.15■□□□□ 0.5
CDX2Q99626 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.5
CDX2Q99626 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC18.14■□□□□ 0.5
CDX2Q99626 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
CDX2Q99626 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
CDX2Q99626 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC18.14■□□□□ 0.49
CDX2Q99626 FLYWCH1P1-201ENST00000460917 1874 ntBASIC18.14■□□□□ 0.49
CDX2Q99626 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC18.14■□□□□ 0.49
CDX2Q99626 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CDX2Q99626 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CDX2Q99626 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CDX2Q99626 MIR346-201ENST00000362234 95 ntBASIC18.14■□□□□ 0.49
CDX2Q99626 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CDX2Q99626 AC119751.2-201ENST00000504529 210 ntBASIC18.14■□□□□ 0.49
CDX2Q99626 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CDX2Q99626 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC18.14■□□□□ 0.49
CDX2Q99626 AC009407.1-201ENST00000568958 598 ntBASIC18.14■□□□□ 0.49
CDX2Q99626 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC18.14■□□□□ 0.49
CDX2Q99626 AC008267.7-201ENST00000624570 1194 ntBASIC18.14■□□□□ 0.49
CDX2Q99626 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CDX2Q99626 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CDX2Q99626 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC18.14■□□□□ 0.49
CDX2Q99626 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CDX2Q99626 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CDX2Q99626 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC18.14■□□□□ 0.49
CDX2Q99626 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
CDX2Q99626 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CDX2Q99626 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CDX2Q99626 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CDX2Q99626 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CDX2Q99626 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
CDX2Q99626 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC18.13■□□□□ 0.49
CDX2Q99626 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
CDX2Q99626 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CDX2Q99626 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC18.13■□□□□ 0.49
CDX2Q99626 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
CDX2Q99626 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
CDX2Q99626 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms