Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
VPS13AQ96RL7 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC17.22■□□□□ 0.35
VPS13AQ96RL7 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC17.22■□□□□ 0.35
VPS13AQ96RL7 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
VPS13AQ96RL7 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
VPS13AQ96RL7 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC17.21■□□□□ 0.35
VPS13AQ96RL7 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VPS13AQ96RL7 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
VPS13AQ96RL7 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC17.21■□□□□ 0.35
VPS13AQ96RL7 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
VPS13AQ96RL7 PTCHD3P3-201ENST00000403073 906 ntBASIC17.21■□□□□ 0.35
VPS13AQ96RL7 AC069120.2-201ENST00000524091 540 ntBASIC17.21■□□□□ 0.35
VPS13AQ96RL7 LINC01225-203ENST00000563550 1244 ntBASIC17.21■□□□□ 0.35
VPS13AQ96RL7 AC084121.4-201ENST00000641598 221 ntBASIC17.21■□□□□ 0.35
VPS13AQ96RL7 AF228730.8-201ENST00000642140 221 ntBASIC17.21■□□□□ 0.35
VPS13AQ96RL7 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
VPS13AQ96RL7 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VPS13AQ96RL7 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
VPS13AQ96RL7 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
VPS13AQ96RL7 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VPS13AQ96RL7 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
VPS13AQ96RL7 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VPS13AQ96RL7 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VPS13AQ96RL7 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
VPS13AQ96RL7 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC17.21■□□□□ 0.35
VPS13AQ96RL7 SPDYE14P-201ENST00000442619 822 ntBASIC17.21■□□□□ 0.35
VPS13AQ96RL7 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
VPS13AQ96RL7 AL158211.3-201ENST00000607385 239 ntBASIC17.21■□□□□ 0.35
VPS13AQ96RL7 AL162274.1-201ENST00000617191 1098 ntBASIC17.21■□□□□ 0.35
VPS13AQ96RL7 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
VPS13AQ96RL7 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
VPS13AQ96RL7 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
VPS13AQ96RL7 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
VPS13AQ96RL7 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
VPS13AQ96RL7 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC17.21■□□□□ 0.34
VPS13AQ96RL7 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
VPS13AQ96RL7 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
VPS13AQ96RL7 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC17.2■□□□□ 0.34
VPS13AQ96RL7 HARS-203ENST00000431330 1774 ntTSL 2 BASIC17.2■□□□□ 0.34
VPS13AQ96RL7 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
VPS13AQ96RL7 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC17.2■□□□□ 0.34
VPS13AQ96RL7 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC17.2■□□□□ 0.34
VPS13AQ96RL7 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
VPS13AQ96RL7 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
VPS13AQ96RL7 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
VPS13AQ96RL7 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
VPS13AQ96RL7 GGTLC5P-201ENST00000617623 998 ntBASIC17.2■□□□□ 0.34
VPS13AQ96RL7 GPR182-203ENST00000622922 591 ntBASIC17.2■□□□□ 0.34
VPS13AQ96RL7 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VPS13AQ96RL7 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC17.2■□□□□ 0.34
VPS13AQ96RL7 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
VPS13AQ96RL7 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VPS13AQ96RL7 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC17.2■□□□□ 0.34
VPS13AQ96RL7 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VPS13AQ96RL7 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VPS13AQ96RL7 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
VPS13AQ96RL7 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC17.2■□□□□ 0.34
VPS13AQ96RL7 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC17.2■□□□□ 0.34
VPS13AQ96RL7 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC17.2■□□□□ 0.34
VPS13AQ96RL7 HARS-201ENST00000307633 1780 ntTSL 2 BASIC17.19■□□□□ 0.34
VPS13AQ96RL7 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC17.19■□□□□ 0.34
VPS13AQ96RL7 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC17.19■□□□□ 0.34
VPS13AQ96RL7 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
VPS13AQ96RL7 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
VPS13AQ96RL7 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
VPS13AQ96RL7 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
VPS13AQ96RL7 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
VPS13AQ96RL7 PODN-203ENST00000395871 2744 ntTSL 5 BASIC17.19■□□□□ 0.34
VPS13AQ96RL7 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
VPS13AQ96RL7 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
VPS13AQ96RL7 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC17.19■□□□□ 0.34
VPS13AQ96RL7 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
VPS13AQ96RL7 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
VPS13AQ96RL7 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
VPS13AQ96RL7 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC17.19■□□□□ 0.34
VPS13AQ96RL7 AL512384.1-201ENST00000406683 331 ntBASIC17.19■□□□□ 0.34
VPS13AQ96RL7 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC17.19■□□□□ 0.34
VPS13AQ96RL7 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
VPS13AQ96RL7 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
VPS13AQ96RL7 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC17.19■□□□□ 0.34
VPS13AQ96RL7 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC17.19■□□□□ 0.34
VPS13AQ96RL7 CLDN5-201ENST00000403084 2357 ntBASIC17.19■□□□□ 0.34
VPS13AQ96RL7 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
VPS13AQ96RL7 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC17.19■□□□□ 0.34
VPS13AQ96RL7 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC17.19■□□□□ 0.34
VPS13AQ96RL7 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC17.19■□□□□ 0.34
VPS13AQ96RL7 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
VPS13AQ96RL7 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC17.19■□□□□ 0.34
VPS13AQ96RL7 MIR6787-201ENST00000616675 61 ntBASIC17.19■□□□□ 0.34
VPS13AQ96RL7 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
VPS13AQ96RL7 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
VPS13AQ96RL7 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC17.19■□□□□ 0.34
VPS13AQ96RL7 AC073130.3-201ENST00000624389 2278 ntBASIC17.19■□□□□ 0.34
VPS13AQ96RL7 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
VPS13AQ96RL7 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC17.18■□□□□ 0.34
VPS13AQ96RL7 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
VPS13AQ96RL7 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC17.18■□□□□ 0.34
VPS13AQ96RL7 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
VPS13AQ96RL7 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC17.18■□□□□ 0.34
VPS13AQ96RL7 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC17.18■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms