Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PTCHD1Q96NR3 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
PTCHD1Q96NR3 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PTCHD1Q96NR3 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PTCHD1Q96NR3 MED16-201ENST00000269814 1199 ntTSL 5 BASIC16.6■□□□□ 0.25
PTCHD1Q96NR3 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
PTCHD1Q96NR3 CTNS-203ENST00000399306 803 ntTSL 3 BASIC16.6■□□□□ 0.25
PTCHD1Q96NR3 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC16.6■□□□□ 0.25
PTCHD1Q96NR3 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
PTCHD1Q96NR3 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
PTCHD1Q96NR3 AC103564.2-201ENST00000432853 1299 ntBASIC16.6■□□□□ 0.25
PTCHD1Q96NR3 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC16.6■□□□□ 0.25
PTCHD1Q96NR3 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC16.6■□□□□ 0.25
PTCHD1Q96NR3 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC16.6■□□□□ 0.25
PTCHD1Q96NR3 AL121894.2-201ENST00000602977 491 ntBASIC16.6■□□□□ 0.25
PTCHD1Q96NR3 REXO1L6P-202ENST00000619970 1078 ntBASIC16.6■□□□□ 0.25
PTCHD1Q96NR3 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC16.6■□□□□ 0.25
PTCHD1Q96NR3 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
PTCHD1Q96NR3 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
PTCHD1Q96NR3 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
PTCHD1Q96NR3 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC16.6■□□□□ 0.25
PTCHD1Q96NR3 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PTCHD1Q96NR3 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
PTCHD1Q96NR3 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC16.6■□□□□ 0.25
PTCHD1Q96NR3 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC16.6■□□□□ 0.25
PTCHD1Q96NR3 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
PTCHD1Q96NR3 PODN-203ENST00000395871 2744 ntTSL 5 BASIC16.6■□□□□ 0.25
PTCHD1Q96NR3 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC16.6■□□□□ 0.25
PTCHD1Q96NR3 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC16.6■□□□□ 0.25
PTCHD1Q96NR3 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC16.6■□□□□ 0.25
PTCHD1Q96NR3 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC16.59■□□□□ 0.25
PTCHD1Q96NR3 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
PTCHD1Q96NR3 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
PTCHD1Q96NR3 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
PTCHD1Q96NR3 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
PTCHD1Q96NR3 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
PTCHD1Q96NR3 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
PTCHD1Q96NR3 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC16.59■□□□□ 0.25
PTCHD1Q96NR3 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PTCHD1Q96NR3 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
PTCHD1Q96NR3 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
PTCHD1Q96NR3 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
PTCHD1Q96NR3 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PTCHD1Q96NR3 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
PTCHD1Q96NR3 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC16.59■□□□□ 0.25
PTCHD1Q96NR3 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
PTCHD1Q96NR3 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
PTCHD1Q96NR3 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC16.59■□□□□ 0.25
PTCHD1Q96NR3 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
PTCHD1Q96NR3 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC16.59■□□□□ 0.25
PTCHD1Q96NR3 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC16.59■□□□□ 0.25
PTCHD1Q96NR3 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC16.59■□□□□ 0.25
PTCHD1Q96NR3 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
PTCHD1Q96NR3 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
PTCHD1Q96NR3 TMED1-207ENST00000591695 809 ntTSL 5 BASIC16.59■□□□□ 0.25
PTCHD1Q96NR3 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC16.59■□□□□ 0.25
PTCHD1Q96NR3 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
PTCHD1Q96NR3 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PTCHD1Q96NR3 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC16.59■□□□□ 0.25
PTCHD1Q96NR3 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC16.59■□□□□ 0.25
PTCHD1Q96NR3 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PTCHD1Q96NR3 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC16.59■□□□□ 0.25
PTCHD1Q96NR3 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
PTCHD1Q96NR3 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC16.59■□□□□ 0.25
PTCHD1Q96NR3 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC16.59■□□□□ 0.25
PTCHD1Q96NR3 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
PTCHD1Q96NR3 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PTCHD1Q96NR3 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PTCHD1Q96NR3 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PTCHD1Q96NR3 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
PTCHD1Q96NR3 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PTCHD1Q96NR3 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC16.59■□□□□ 0.25
PTCHD1Q96NR3 SIRPAP1-201ENST00000448467 1770 ntBASIC16.59■□□□□ 0.25
PTCHD1Q96NR3 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
PTCHD1Q96NR3 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
PTCHD1Q96NR3 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC16.58■□□□□ 0.25
PTCHD1Q96NR3 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
PTCHD1Q96NR3 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.25
PTCHD1Q96NR3 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
PTCHD1Q96NR3 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.25
PTCHD1Q96NR3 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
PTCHD1Q96NR3 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC16.58■□□□□ 0.25
PTCHD1Q96NR3 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
PTCHD1Q96NR3 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
PTCHD1Q96NR3 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
PTCHD1Q96NR3 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
PTCHD1Q96NR3 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
PTCHD1Q96NR3 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
PTCHD1Q96NR3 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
PTCHD1Q96NR3 SLC25A6P5-201ENST00000435663 894 ntBASIC16.58■□□□□ 0.24
PTCHD1Q96NR3 ABCD1P5-201ENST00000445663 754 ntBASIC16.58■□□□□ 0.24
PTCHD1Q96NR3 FAAHP1-202ENST00000446499 1238 ntBASIC16.58■□□□□ 0.24
PTCHD1Q96NR3 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC16.58■□□□□ 0.24
PTCHD1Q96NR3 SAPCD2P3-201ENST00000455031 850 ntBASIC16.58■□□□□ 0.24
PTCHD1Q96NR3 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC16.58■□□□□ 0.24
PTCHD1Q96NR3 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC16.58■□□□□ 0.24
PTCHD1Q96NR3 BMF-207ENST00000559701 630 ntTSL 3 BASIC16.58■□□□□ 0.24
PTCHD1Q96NR3 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC16.58■□□□□ 0.24
PTCHD1Q96NR3 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
PTCHD1Q96NR3 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC16.58■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 55.6 ms