Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
VMP1Q96GC9 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC16.88■□□□□ 0.29
VMP1Q96GC9 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
VMP1Q96GC9 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
VMP1Q96GC9 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC16.88■□□□□ 0.29
VMP1Q96GC9 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
VMP1Q96GC9 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
VMP1Q96GC9 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
VMP1Q96GC9 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
VMP1Q96GC9 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC16.87■□□□□ 0.29
VMP1Q96GC9 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC16.87■□□□□ 0.29
VMP1Q96GC9 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
VMP1Q96GC9 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
VMP1Q96GC9 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
VMP1Q96GC9 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
VMP1Q96GC9 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
VMP1Q96GC9 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
VMP1Q96GC9 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC16.87■□□□□ 0.29
VMP1Q96GC9 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC16.87■□□□□ 0.29
VMP1Q96GC9 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC16.87■□□□□ 0.29
VMP1Q96GC9 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC16.87■□□□□ 0.29
VMP1Q96GC9 AP002414.4-201ENST00000589764 1148 ntBASIC16.87■□□□□ 0.29
VMP1Q96GC9 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC16.87■□□□□ 0.29
VMP1Q96GC9 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
VMP1Q96GC9 ANKRD20A8P-203ENST00000641373 517 ntBASIC16.87■□□□□ 0.29
VMP1Q96GC9 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC16.87■□□□□ 0.29
VMP1Q96GC9 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
VMP1Q96GC9 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
VMP1Q96GC9 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
VMP1Q96GC9 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
VMP1Q96GC9 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
VMP1Q96GC9 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC16.87■□□□□ 0.29
VMP1Q96GC9 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
VMP1Q96GC9 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
VMP1Q96GC9 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
VMP1Q96GC9 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC16.87■□□□□ 0.29
VMP1Q96GC9 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
VMP1Q96GC9 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
VMP1Q96GC9 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
VMP1Q96GC9 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
VMP1Q96GC9 NARF-204ENST00000390006 1766 ntTSL 2 BASIC16.87■□□□□ 0.29
VMP1Q96GC9 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
VMP1Q96GC9 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VMP1Q96GC9 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
VMP1Q96GC9 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VMP1Q96GC9 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VMP1Q96GC9 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC16.86■□□□□ 0.29
VMP1Q96GC9 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC16.86■□□□□ 0.29
VMP1Q96GC9 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC16.86■□□□□ 0.29
VMP1Q96GC9 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VMP1Q96GC9 AC018695.7-201ENST00000624587 2492 ntBASIC16.86■□□□□ 0.29
VMP1Q96GC9 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
VMP1Q96GC9 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VMP1Q96GC9 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VMP1Q96GC9 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VMP1Q96GC9 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
VMP1Q96GC9 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VMP1Q96GC9 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC16.86■□□□□ 0.29
VMP1Q96GC9 AP002383.4-201ENST00000442518 975 ntBASIC16.86■□□□□ 0.29
VMP1Q96GC9 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
VMP1Q96GC9 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
VMP1Q96GC9 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC16.86■□□□□ 0.29
VMP1Q96GC9 AC092329.2-201ENST00000598402 547 ntBASIC16.86■□□□□ 0.29
VMP1Q96GC9 AC092119.3-201ENST00000612618 583 ntBASIC16.86■□□□□ 0.29
VMP1Q96GC9 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
VMP1Q96GC9 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VMP1Q96GC9 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
VMP1Q96GC9 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
VMP1Q96GC9 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
VMP1Q96GC9 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
VMP1Q96GC9 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VMP1Q96GC9 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VMP1Q96GC9 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VMP1Q96GC9 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
VMP1Q96GC9 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
VMP1Q96GC9 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
VMP1Q96GC9 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
VMP1Q96GC9 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC16.85■□□□□ 0.29
VMP1Q96GC9 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC16.85■□□□□ 0.29
VMP1Q96GC9 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
VMP1Q96GC9 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
VMP1Q96GC9 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC16.85■□□□□ 0.29
VMP1Q96GC9 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
VMP1Q96GC9 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
VMP1Q96GC9 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
VMP1Q96GC9 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
VMP1Q96GC9 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC16.85■□□□□ 0.29
VMP1Q96GC9 TSPY12P-201ENST00000421279 868 ntBASIC16.85■□□□□ 0.29
VMP1Q96GC9 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC16.85■□□□□ 0.29
VMP1Q96GC9 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC16.85■□□□□ 0.29
VMP1Q96GC9 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC16.85■□□□□ 0.29
VMP1Q96GC9 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
VMP1Q96GC9 IL11-204ENST00000590625 1028 ntTSL 2 BASIC16.85■□□□□ 0.29
VMP1Q96GC9 AL592071.1-201ENST00000611956 408 ntBASIC16.85■□□□□ 0.29
VMP1Q96GC9 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC16.85■□□□□ 0.29
VMP1Q96GC9 NF2-208ENST00000403435 2568 ntTSL 5 BASIC16.85■□□□□ 0.29
VMP1Q96GC9 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
VMP1Q96GC9 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC16.85■□□□□ 0.29
VMP1Q96GC9 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
VMP1Q96GC9 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC16.85■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms