Protein–RNA interactions for Protein: Q8TD31

CCHCR1, Coiled-coil alpha-helical rod protein 1, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCHCR1Q8TD31 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
CCHCR1Q8TD31 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCHCR1Q8TD31 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC18.36■□□□□ 0.53
CCHCR1Q8TD31 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCHCR1Q8TD31 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCHCR1Q8TD31 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCHCR1Q8TD31 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC18.36■□□□□ 0.53
CCHCR1Q8TD31 GUK1-204ENST00000366721 689 ntTSL 3 BASIC18.36■□□□□ 0.53
CCHCR1Q8TD31 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CCHCR1Q8TD31 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC18.36■□□□□ 0.53
CCHCR1Q8TD31 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
CCHCR1Q8TD31 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC18.36■□□□□ 0.53
CCHCR1Q8TD31 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC18.36■□□□□ 0.53
CCHCR1Q8TD31 KRT18P65-201ENST00000439811 1286 ntBASIC18.36■□□□□ 0.53
CCHCR1Q8TD31 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCHCR1Q8TD31 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC18.36■□□□□ 0.53
CCHCR1Q8TD31 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC18.36■□□□□ 0.53
CCHCR1Q8TD31 LINC01311-201ENST00000565162 1445 ntBASIC18.36■□□□□ 0.53
CCHCR1Q8TD31 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCHCR1Q8TD31 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC18.36■□□□□ 0.53
CCHCR1Q8TD31 AC087388.1-201ENST00000571370 1112 ntBASIC18.36■□□□□ 0.53
CCHCR1Q8TD31 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC18.36■□□□□ 0.53
CCHCR1Q8TD31 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC18.36■□□□□ 0.53
CCHCR1Q8TD31 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC18.36■□□□□ 0.53
CCHCR1Q8TD31 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCHCR1Q8TD31 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC18.36■□□□□ 0.53
CCHCR1Q8TD31 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCHCR1Q8TD31 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCHCR1Q8TD31 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
CCHCR1Q8TD31 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CCHCR1Q8TD31 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC18.35■□□□□ 0.53
CCHCR1Q8TD31 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC18.35■□□□□ 0.53
CCHCR1Q8TD31 AL391807.1-203ENST00000604392 2365 ntBASIC18.35■□□□□ 0.53
CCHCR1Q8TD31 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CCHCR1Q8TD31 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CCHCR1Q8TD31 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CCHCR1Q8TD31 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CCHCR1Q8TD31 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC18.35■□□□□ 0.53
CCHCR1Q8TD31 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
CCHCR1Q8TD31 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
CCHCR1Q8TD31 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
CCHCR1Q8TD31 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CCHCR1Q8TD31 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC18.35■□□□□ 0.53
CCHCR1Q8TD31 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
CCHCR1Q8TD31 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CCHCR1Q8TD31 KRT89P-201ENST00000620027 1478 ntBASIC18.35■□□□□ 0.53
CCHCR1Q8TD31 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC18.35■□□□□ 0.53
CCHCR1Q8TD31 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
CCHCR1Q8TD31 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC18.35■□□□□ 0.53
CCHCR1Q8TD31 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
CCHCR1Q8TD31 NKILA-202ENST00000614771 2598 ntBASIC18.35■□□□□ 0.53
CCHCR1Q8TD31 LY6E-213ENST00000522528 606 ntTSL 3 BASIC18.35■□□□□ 0.53
CCHCR1Q8TD31 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC18.35■□□□□ 0.53
CCHCR1Q8TD31 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
CCHCR1Q8TD31 USF2-205ENST00000594064 1179 ntTSL 2 BASIC18.35■□□□□ 0.53
CCHCR1Q8TD31 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CCHCR1Q8TD31 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CCHCR1Q8TD31 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CCHCR1Q8TD31 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
CCHCR1Q8TD31 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CCHCR1Q8TD31 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC18.35■□□□□ 0.53
CCHCR1Q8TD31 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CCHCR1Q8TD31 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC18.35■□□□□ 0.53
CCHCR1Q8TD31 AC009949.1-201ENST00000623048 1830 ntBASIC18.35■□□□□ 0.53
CCHCR1Q8TD31 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CCHCR1Q8TD31 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CCHCR1Q8TD31 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC18.35■□□□□ 0.53
CCHCR1Q8TD31 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC18.35■□□□□ 0.53
CCHCR1Q8TD31 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
CCHCR1Q8TD31 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CCHCR1Q8TD31 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CCHCR1Q8TD31 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CCHCR1Q8TD31 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC18.34■□□□□ 0.53
CCHCR1Q8TD31 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
CCHCR1Q8TD31 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
CCHCR1Q8TD31 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CCHCR1Q8TD31 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CCHCR1Q8TD31 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
CCHCR1Q8TD31 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC18.34■□□□□ 0.53
CCHCR1Q8TD31 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC18.34■□□□□ 0.53
CCHCR1Q8TD31 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CCHCR1Q8TD31 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
CCHCR1Q8TD31 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CCHCR1Q8TD31 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CCHCR1Q8TD31 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
CCHCR1Q8TD31 HBZP1-201ENST00000354915 429 ntBASIC18.34■□□□□ 0.53
CCHCR1Q8TD31 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CCHCR1Q8TD31 DAP-202ENST00000432074 1048 ntTSL 2 BASIC18.34■□□□□ 0.53
CCHCR1Q8TD31 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC18.34■□□□□ 0.53
CCHCR1Q8TD31 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC18.34■□□□□ 0.53
CCHCR1Q8TD31 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC18.34■□□□□ 0.53
CCHCR1Q8TD31 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC18.34■□□□□ 0.53
CCHCR1Q8TD31 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC18.34■□□□□ 0.53
CCHCR1Q8TD31 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC18.34■□□□□ 0.53
CCHCR1Q8TD31 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC18.34■□□□□ 0.53
CCHCR1Q8TD31 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
CCHCR1Q8TD31 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CCHCR1Q8TD31 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC18.34■□□□□ 0.53
CCHCR1Q8TD31 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
CCHCR1Q8TD31 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 53.9 ms