Protein–RNA interactions for Protein: Q8N998

CCDC89, Coiled-coil domain-containing protein 89, humanhuman

Predictions only

Length 374 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC89Q8N998 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CCDC89Q8N998 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CCDC89Q8N998 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
CCDC89Q8N998 AC016396.2-201ENST00000562575 1417 ntBASIC18.26■□□□□ 0.51
CCDC89Q8N998 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC18.26■□□□□ 0.51
CCDC89Q8N998 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC18.26■□□□□ 0.51
CCDC89Q8N998 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC18.26■□□□□ 0.51
CCDC89Q8N998 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CCDC89Q8N998 SPDYE15P-201ENST00000424157 909 ntBASIC18.26■□□□□ 0.51
CCDC89Q8N998 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC18.26■□□□□ 0.51
CCDC89Q8N998 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC18.26■□□□□ 0.51
CCDC89Q8N998 PPOX-214ENST00000535223 664 ntTSL 3 BASIC18.26■□□□□ 0.51
CCDC89Q8N998 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CCDC89Q8N998 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC18.26■□□□□ 0.51
CCDC89Q8N998 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
CCDC89Q8N998 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC18.26■□□□□ 0.51
CCDC89Q8N998 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC18.26■□□□□ 0.51
CCDC89Q8N998 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
CCDC89Q8N998 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC18.26■□□□□ 0.51
CCDC89Q8N998 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
CCDC89Q8N998 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
CCDC89Q8N998 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CCDC89Q8N998 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CCDC89Q8N998 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CCDC89Q8N998 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CCDC89Q8N998 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC18.26■□□□□ 0.51
CCDC89Q8N998 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CCDC89Q8N998 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CCDC89Q8N998 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
CCDC89Q8N998 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CCDC89Q8N998 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CCDC89Q8N998 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CCDC89Q8N998 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC18.25■□□□□ 0.51
CCDC89Q8N998 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC18.25■□□□□ 0.51
CCDC89Q8N998 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CCDC89Q8N998 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CCDC89Q8N998 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC18.25■□□□□ 0.51
CCDC89Q8N998 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
CCDC89Q8N998 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC18.25■□□□□ 0.51
CCDC89Q8N998 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CCDC89Q8N998 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
CCDC89Q8N998 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CCDC89Q8N998 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC18.25■□□□□ 0.51
CCDC89Q8N998 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
CCDC89Q8N998 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CCDC89Q8N998 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CCDC89Q8N998 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC18.25■□□□□ 0.51
CCDC89Q8N998 STARP1-201ENST00000397973 869 ntBASIC18.25■□□□□ 0.51
CCDC89Q8N998 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CCDC89Q8N998 DDT-203ENST00000403754 569 ntTSL 3 BASIC18.25■□□□□ 0.51
CCDC89Q8N998 DDT-206ENST00000430101 573 ntTSL 2 BASIC18.25■□□□□ 0.51
CCDC89Q8N998 HLA-F-220ENST00000434407 884 ntBASIC18.25■□□□□ 0.51
CCDC89Q8N998 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC18.25■□□□□ 0.51
CCDC89Q8N998 GXYLT1P4-201ENST00000613576 1192 ntBASIC18.25■□□□□ 0.51
CCDC89Q8N998 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
CCDC89Q8N998 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CCDC89Q8N998 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC18.25■□□□□ 0.51
CCDC89Q8N998 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
CCDC89Q8N998 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CCDC89Q8N998 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
CCDC89Q8N998 LGALS8-AS1-201ENST00000487567 1457 ntBASIC18.25■□□□□ 0.51
CCDC89Q8N998 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC18.25■□□□□ 0.51
CCDC89Q8N998 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CCDC89Q8N998 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CCDC89Q8N998 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CCDC89Q8N998 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
CCDC89Q8N998 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CCDC89Q8N998 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC18.24■□□□□ 0.51
CCDC89Q8N998 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC18.24■□□□□ 0.51
CCDC89Q8N998 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
CCDC89Q8N998 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
CCDC89Q8N998 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CCDC89Q8N998 BX276092.7-203ENST00000637198 1536 ntBASIC18.24■□□□□ 0.51
CCDC89Q8N998 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CCDC89Q8N998 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
CCDC89Q8N998 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CCDC89Q8N998 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CCDC89Q8N998 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
CCDC89Q8N998 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CCDC89Q8N998 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CCDC89Q8N998 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CCDC89Q8N998 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
CCDC89Q8N998 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
CCDC89Q8N998 AL137013.1-201ENST00000432946 1228 ntBASIC18.24■□□□□ 0.51
CCDC89Q8N998 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CCDC89Q8N998 AC112698.1-201ENST00000510299 916 ntBASIC18.24■□□□□ 0.51
CCDC89Q8N998 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC18.24■□□□□ 0.51
CCDC89Q8N998 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
CCDC89Q8N998 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC18.24■□□□□ 0.51
CCDC89Q8N998 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC18.24■□□□□ 0.51
CCDC89Q8N998 LITAF-220ENST00000620789 692 ntTSL 5 BASIC18.24■□□□□ 0.51
CCDC89Q8N998 AC066615.1-201ENST00000640911 628 ntBASIC18.24■□□□□ 0.51
CCDC89Q8N998 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
CCDC89Q8N998 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CCDC89Q8N998 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CCDC89Q8N998 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CCDC89Q8N998 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
CCDC89Q8N998 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CCDC89Q8N998 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CCDC89Q8N998 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms