Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC60Q8IWA6 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC60Q8IWA6 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC60Q8IWA6 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC60Q8IWA6 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
CCDC60Q8IWA6 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC19.5■□□□□ 0.71
CCDC60Q8IWA6 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC19.5■□□□□ 0.71
CCDC60Q8IWA6 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC60Q8IWA6 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC60Q8IWA6 ZNF259P1-201ENST00000407656 1365 ntBASIC19.5■□□□□ 0.71
CCDC60Q8IWA6 NOC2LP1-202ENST00000452600 2235 ntBASIC19.5■□□□□ 0.71
CCDC60Q8IWA6 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC60Q8IWA6 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
CCDC60Q8IWA6 POLD2P1-201ENST00000511220 997 ntBASIC19.5■□□□□ 0.71
CCDC60Q8IWA6 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC19.5■□□□□ 0.71
CCDC60Q8IWA6 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC19.5■□□□□ 0.71
CCDC60Q8IWA6 Z83851.2-201ENST00000609564 659 ntBASIC19.5■□□□□ 0.71
CCDC60Q8IWA6 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC19.5■□□□□ 0.71
CCDC60Q8IWA6 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC19.5■□□□□ 0.71
CCDC60Q8IWA6 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC19.5■□□□□ 0.71
CCDC60Q8IWA6 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
CCDC60Q8IWA6 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC19.5■□□□□ 0.71
CCDC60Q8IWA6 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC19.5■□□□□ 0.71
CCDC60Q8IWA6 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC60Q8IWA6 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC19.5■□□□□ 0.71
CCDC60Q8IWA6 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
CCDC60Q8IWA6 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
CCDC60Q8IWA6 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC60Q8IWA6 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC60Q8IWA6 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC19.49■□□□□ 0.71
CCDC60Q8IWA6 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC60Q8IWA6 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC60Q8IWA6 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC60Q8IWA6 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC60Q8IWA6 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC60Q8IWA6 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC60Q8IWA6 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC60Q8IWA6 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC60Q8IWA6 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC19.49■□□□□ 0.71
CCDC60Q8IWA6 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC19.49■□□□□ 0.71
CCDC60Q8IWA6 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC60Q8IWA6 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC19.49■□□□□ 0.71
CCDC60Q8IWA6 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC19.49■□□□□ 0.71
CCDC60Q8IWA6 SLC25A6P5-201ENST00000435663 894 ntBASIC19.49■□□□□ 0.71
CCDC60Q8IWA6 AC136632.2-201ENST00000512891 861 ntBASIC19.49■□□□□ 0.71
CCDC60Q8IWA6 KRT18P58-201ENST00000527480 1120 ntBASIC19.49■□□□□ 0.71
CCDC60Q8IWA6 CALM1-205ENST00000553542 877 ntTSL 5 BASIC19.49■□□□□ 0.71
CCDC60Q8IWA6 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC19.49■□□□□ 0.71
CCDC60Q8IWA6 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC19.49■□□□□ 0.71
CCDC60Q8IWA6 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC19.49■□□□□ 0.71
CCDC60Q8IWA6 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC19.49■□□□□ 0.71
CCDC60Q8IWA6 MIR1199-201ENST00000621445 119 ntBASIC19.49■□□□□ 0.71
CCDC60Q8IWA6 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC19.49■□□□□ 0.71
CCDC60Q8IWA6 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC60Q8IWA6 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC19.49■□□□□ 0.71
CCDC60Q8IWA6 AC097637.2-201ENST00000624096 1997 ntBASIC19.49■□□□□ 0.71
CCDC60Q8IWA6 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
CCDC60Q8IWA6 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC19.49■□□□□ 0.71
CCDC60Q8IWA6 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC60Q8IWA6 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC60Q8IWA6 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC19.49■□□□□ 0.71
CCDC60Q8IWA6 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC60Q8IWA6 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC60Q8IWA6 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC60Q8IWA6 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC60Q8IWA6 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC19.48■□□□□ 0.71
CCDC60Q8IWA6 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC60Q8IWA6 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC19.48■□□□□ 0.71
CCDC60Q8IWA6 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC19.48■□□□□ 0.71
CCDC60Q8IWA6 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC60Q8IWA6 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC19.48■□□□□ 0.71
CCDC60Q8IWA6 AC009947.1-201ENST00000444350 727 ntBASIC19.48■□□□□ 0.71
CCDC60Q8IWA6 ARTN-206ENST00000472435 402 ntTSL 3 BASIC19.48■□□□□ 0.71
CCDC60Q8IWA6 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC19.48■□□□□ 0.71
CCDC60Q8IWA6 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC60Q8IWA6 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC60Q8IWA6 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC19.48■□□□□ 0.71
CCDC60Q8IWA6 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC19.48■□□□□ 0.71
CCDC60Q8IWA6 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC60Q8IWA6 AL139424.1-201ENST00000607572 797 ntBASIC19.48■□□□□ 0.71
CCDC60Q8IWA6 CD276-203ENST00000537340 2439 ntTSL 2 BASIC19.48■□□□□ 0.71
CCDC60Q8IWA6 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC60Q8IWA6 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC19.48■□□□□ 0.71
CCDC60Q8IWA6 AC008764.6-201ENST00000595909 2069 ntBASIC19.48■□□□□ 0.71
CCDC60Q8IWA6 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC60Q8IWA6 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC60Q8IWA6 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC19.47■□□□□ 0.71
CCDC60Q8IWA6 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC60Q8IWA6 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC60Q8IWA6 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC60Q8IWA6 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC19.47■□□□□ 0.71
CCDC60Q8IWA6 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC19.47■□□□□ 0.71
CCDC60Q8IWA6 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC60Q8IWA6 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC60Q8IWA6 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC60Q8IWA6 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC60Q8IWA6 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC60Q8IWA6 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC60Q8IWA6 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC60Q8IWA6 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms