Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC16.9■□□□□ 0.3
PPP4R4Q6NUP7 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC16.9■□□□□ 0.3
PPP4R4Q6NUP7 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC16.9■□□□□ 0.3
PPP4R4Q6NUP7 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC16.9■□□□□ 0.3
PPP4R4Q6NUP7 P4HB-223ENST00000576390 439 ntTSL 4 BASIC16.9■□□□□ 0.3
PPP4R4Q6NUP7 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC16.9■□□□□ 0.3
PPP4R4Q6NUP7 AL023803.3-201ENST00000615559 522 ntBASIC16.9■□□□□ 0.3
PPP4R4Q6NUP7 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PPP4R4Q6NUP7 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
PPP4R4Q6NUP7 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC16.9■□□□□ 0.3
PPP4R4Q6NUP7 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
PPP4R4Q6NUP7 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PPP4R4Q6NUP7 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
PPP4R4Q6NUP7 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
PPP4R4Q6NUP7 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PPP4R4Q6NUP7 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC16.9■□□□□ 0.3
PPP4R4Q6NUP7 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PPP4R4Q6NUP7 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
PPP4R4Q6NUP7 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PPP4R4Q6NUP7 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC16.9■□□□□ 0.3
PPP4R4Q6NUP7 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PPP4R4Q6NUP7 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC16.9■□□□□ 0.3
PPP4R4Q6NUP7 CICP6-201ENST00000457191 2729 ntBASIC16.9■□□□□ 0.3
PPP4R4Q6NUP7 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
PPP4R4Q6NUP7 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.3
PPP4R4Q6NUP7 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC16.89■□□□□ 0.3
PPP4R4Q6NUP7 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
PPP4R4Q6NUP7 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
PPP4R4Q6NUP7 MST1L-201ENST00000442552 2185 ntBASIC16.89■□□□□ 0.3
PPP4R4Q6NUP7 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
PPP4R4Q6NUP7 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
PPP4R4Q6NUP7 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC16.89■□□□□ 0.29
PPP4R4Q6NUP7 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
PPP4R4Q6NUP7 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC16.89■□□□□ 0.29
PPP4R4Q6NUP7 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC16.89■□□□□ 0.29
PPP4R4Q6NUP7 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
PPP4R4Q6NUP7 AL109659.2-201ENST00000606809 1674 ntBASIC16.89■□□□□ 0.29
PPP4R4Q6NUP7 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC16.89■□□□□ 0.29
PPP4R4Q6NUP7 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC16.89■□□□□ 0.29
PPP4R4Q6NUP7 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
PPP4R4Q6NUP7 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC16.89■□□□□ 0.29
PPP4R4Q6NUP7 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC16.89■□□□□ 0.29
PPP4R4Q6NUP7 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC16.89■□□□□ 0.29
PPP4R4Q6NUP7 AC092865.7-201ENST00000641832 219 ntBASIC16.89■□□□□ 0.29
PPP4R4Q6NUP7 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
PPP4R4Q6NUP7 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC16.89■□□□□ 0.29
PPP4R4Q6NUP7 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC16.89■□□□□ 0.29
PPP4R4Q6NUP7 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
PPP4R4Q6NUP7 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
PPP4R4Q6NUP7 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
PPP4R4Q6NUP7 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
PPP4R4Q6NUP7 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC16.89■□□□□ 0.29
PPP4R4Q6NUP7 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
PPP4R4Q6NUP7 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
PPP4R4Q6NUP7 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
PPP4R4Q6NUP7 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
PPP4R4Q6NUP7 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC16.88■□□□□ 0.29
PPP4R4Q6NUP7 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
PPP4R4Q6NUP7 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
PPP4R4Q6NUP7 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
PPP4R4Q6NUP7 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
PPP4R4Q6NUP7 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC16.88■□□□□ 0.29
PPP4R4Q6NUP7 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
PPP4R4Q6NUP7 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
PPP4R4Q6NUP7 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
PPP4R4Q6NUP7 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC16.88■□□□□ 0.29
PPP4R4Q6NUP7 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC16.88■□□□□ 0.29
PPP4R4Q6NUP7 MCCD1P1-208ENST00000445732 328 ntBASIC16.88■□□□□ 0.29
PPP4R4Q6NUP7 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
PPP4R4Q6NUP7 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
PPP4R4Q6NUP7 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC16.88■□□□□ 0.29
PPP4R4Q6NUP7 AL512604.3-201ENST00000569583 964 ntBASIC16.88■□□□□ 0.29
PPP4R4Q6NUP7 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC16.88■□□□□ 0.29
PPP4R4Q6NUP7 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
PPP4R4Q6NUP7 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
PPP4R4Q6NUP7 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC16.88■□□□□ 0.29
PPP4R4Q6NUP7 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC16.88■□□□□ 0.29
PPP4R4Q6NUP7 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
PPP4R4Q6NUP7 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC16.88■□□□□ 0.29
PPP4R4Q6NUP7 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
PPP4R4Q6NUP7 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
PPP4R4Q6NUP7 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
PPP4R4Q6NUP7 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC16.88■□□□□ 0.29
PPP4R4Q6NUP7 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC16.88■□□□□ 0.29
PPP4R4Q6NUP7 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
PPP4R4Q6NUP7 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
PPP4R4Q6NUP7 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
PPP4R4Q6NUP7 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
PPP4R4Q6NUP7 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
PPP4R4Q6NUP7 GPAT2P1-201ENST00000444924 1672 ntBASIC16.88■□□□□ 0.29
PPP4R4Q6NUP7 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
PPP4R4Q6NUP7 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC16.87■□□□□ 0.29
PPP4R4Q6NUP7 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
PPP4R4Q6NUP7 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
PPP4R4Q6NUP7 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
PPP4R4Q6NUP7 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
PPP4R4Q6NUP7 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
PPP4R4Q6NUP7 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC16.87■□□□□ 0.29
PPP4R4Q6NUP7 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
PPP4R4Q6NUP7 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC16.87■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms