Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CHD9Q3L8U1 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC18.44■□□□□ 0.54
CHD9Q3L8U1 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CHD9Q3L8U1 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CHD9Q3L8U1 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CHD9Q3L8U1 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CHD9Q3L8U1 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC18.44■□□□□ 0.54
CHD9Q3L8U1 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CHD9Q3L8U1 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CHD9Q3L8U1 SPCS2P4-201ENST00000436160 681 ntBASIC18.44■□□□□ 0.54
CHD9Q3L8U1 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
CHD9Q3L8U1 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC18.44■□□□□ 0.54
CHD9Q3L8U1 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC18.44■□□□□ 0.54
CHD9Q3L8U1 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
CHD9Q3L8U1 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CHD9Q3L8U1 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CHD9Q3L8U1 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC18.44■□□□□ 0.54
CHD9Q3L8U1 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CHD9Q3L8U1 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC18.44■□□□□ 0.54
CHD9Q3L8U1 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CHD9Q3L8U1 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC18.44■□□□□ 0.54
CHD9Q3L8U1 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CHD9Q3L8U1 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CHD9Q3L8U1 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC18.44■□□□□ 0.54
CHD9Q3L8U1 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC18.44■□□□□ 0.54
CHD9Q3L8U1 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC18.44■□□□□ 0.54
CHD9Q3L8U1 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC18.44■□□□□ 0.54
CHD9Q3L8U1 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC18.44■□□□□ 0.54
CHD9Q3L8U1 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
CHD9Q3L8U1 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC18.43■□□□□ 0.54
CHD9Q3L8U1 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CHD9Q3L8U1 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC18.43■□□□□ 0.54
CHD9Q3L8U1 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC18.43■□□□□ 0.54
CHD9Q3L8U1 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC18.43■□□□□ 0.54
CHD9Q3L8U1 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC18.43■□□□□ 0.54
CHD9Q3L8U1 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
CHD9Q3L8U1 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CHD9Q3L8U1 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
CHD9Q3L8U1 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC18.43■□□□□ 0.54
CHD9Q3L8U1 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CHD9Q3L8U1 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CHD9Q3L8U1 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
CHD9Q3L8U1 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
CHD9Q3L8U1 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
CHD9Q3L8U1 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
CHD9Q3L8U1 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
CHD9Q3L8U1 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
CHD9Q3L8U1 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC18.43■□□□□ 0.54
CHD9Q3L8U1 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CHD9Q3L8U1 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC18.43■□□□□ 0.54
CHD9Q3L8U1 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CHD9Q3L8U1 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CHD9Q3L8U1 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CHD9Q3L8U1 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC18.42■□□□□ 0.54
CHD9Q3L8U1 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CHD9Q3L8U1 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC18.42■□□□□ 0.54
CHD9Q3L8U1 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CHD9Q3L8U1 AL671277.1-201ENST00000429656 993 ntBASIC18.42■□□□□ 0.54
CHD9Q3L8U1 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
CHD9Q3L8U1 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC18.42■□□□□ 0.54
CHD9Q3L8U1 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC18.42■□□□□ 0.54
CHD9Q3L8U1 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC18.42■□□□□ 0.54
CHD9Q3L8U1 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CHD9Q3L8U1 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC18.42■□□□□ 0.54
CHD9Q3L8U1 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC18.42■□□□□ 0.54
CHD9Q3L8U1 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CHD9Q3L8U1 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CHD9Q3L8U1 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC18.42■□□□□ 0.54
CHD9Q3L8U1 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CHD9Q3L8U1 GATD1-206ENST00000526325 756 ntTSL 5 BASIC18.42■□□□□ 0.54
CHD9Q3L8U1 AL158211.3-201ENST00000607385 239 ntBASIC18.42■□□□□ 0.54
CHD9Q3L8U1 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
CHD9Q3L8U1 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
CHD9Q3L8U1 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
CHD9Q3L8U1 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CHD9Q3L8U1 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CHD9Q3L8U1 PIN1P1-201ENST00000412108 996 ntBASIC18.41■□□□□ 0.54
CHD9Q3L8U1 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC18.41■□□□□ 0.54
CHD9Q3L8U1 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC18.41■□□□□ 0.54
CHD9Q3L8U1 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
CHD9Q3L8U1 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
CHD9Q3L8U1 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CHD9Q3L8U1 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CHD9Q3L8U1 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CHD9Q3L8U1 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CHD9Q3L8U1 CU639417.3-201ENST00000624240 1404 ntBASIC18.41■□□□□ 0.54
CHD9Q3L8U1 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC18.41■□□□□ 0.54
CHD9Q3L8U1 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC18.41■□□□□ 0.54
CHD9Q3L8U1 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC18.41■□□□□ 0.54
CHD9Q3L8U1 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CHD9Q3L8U1 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC18.41■□□□□ 0.54
CHD9Q3L8U1 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
CHD9Q3L8U1 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC18.41■□□□□ 0.54
CHD9Q3L8U1 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC18.41■□□□□ 0.54
CHD9Q3L8U1 SSH2-211ENST00000590153 570 ntTSL 4 BASIC18.41■□□□□ 0.54
CHD9Q3L8U1 AC116407.2-201ENST00000613639 860 ntBASIC18.41■□□□□ 0.54
CHD9Q3L8U1 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC18.41■□□□□ 0.54
CHD9Q3L8U1 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC18.41■□□□□ 0.54
CHD9Q3L8U1 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CHD9Q3L8U1 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms