Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
COL28A1Q2UY09 AC007274.1-201ENST00000439805 662 ntBASIC16.89■□□□□ 0.29
COL28A1Q2UY09 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC16.89■□□□□ 0.29
COL28A1Q2UY09 CEND1P1-201ENST00000451006 455 ntBASIC16.89■□□□□ 0.29
COL28A1Q2UY09 MEG3-211ENST00000452514 461 ntTSL 3 BASIC16.89■□□□□ 0.29
COL28A1Q2UY09 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC16.89■□□□□ 0.29
COL28A1Q2UY09 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC16.89■□□□□ 0.29
COL28A1Q2UY09 NKAPP1-205ENST00000585790 367 ntBASIC16.89■□□□□ 0.29
COL28A1Q2UY09 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC16.89■□□□□ 0.29
COL28A1Q2UY09 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC16.89■□□□□ 0.29
COL28A1Q2UY09 AL078644.1-201ENST00000609881 752 ntBASIC16.89■□□□□ 0.29
COL28A1Q2UY09 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
COL28A1Q2UY09 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC16.89■□□□□ 0.29
COL28A1Q2UY09 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC16.89■□□□□ 0.29
COL28A1Q2UY09 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
COL28A1Q2UY09 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
COL28A1Q2UY09 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC16.89■□□□□ 0.29
COL28A1Q2UY09 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
COL28A1Q2UY09 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
COL28A1Q2UY09 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
COL28A1Q2UY09 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC16.89■□□□□ 0.29
COL28A1Q2UY09 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC16.89■□□□□ 0.29
COL28A1Q2UY09 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
COL28A1Q2UY09 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
COL28A1Q2UY09 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC16.88■□□□□ 0.29
COL28A1Q2UY09 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC16.88■□□□□ 0.29
COL28A1Q2UY09 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC16.88■□□□□ 0.29
COL28A1Q2UY09 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
COL28A1Q2UY09 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC16.88■□□□□ 0.29
COL28A1Q2UY09 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
COL28A1Q2UY09 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
COL28A1Q2UY09 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
COL28A1Q2UY09 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC16.88■□□□□ 0.29
COL28A1Q2UY09 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
COL28A1Q2UY09 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
COL28A1Q2UY09 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
COL28A1Q2UY09 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
COL28A1Q2UY09 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
COL28A1Q2UY09 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
COL28A1Q2UY09 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
COL28A1Q2UY09 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
COL28A1Q2UY09 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
COL28A1Q2UY09 TSEN15P1-201ENST00000423257 515 ntBASIC16.88■□□□□ 0.29
COL28A1Q2UY09 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC16.88■□□□□ 0.29
COL28A1Q2UY09 PRSS29P-201ENST00000440800 595 ntBASIC16.88■□□□□ 0.29
COL28A1Q2UY09 DANCR-204ENST00000444958 709 ntTSL 3 BASIC16.88■□□□□ 0.29
COL28A1Q2UY09 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC16.88■□□□□ 0.29
COL28A1Q2UY09 MSRA-206ENST00000521209 814 ntTSL 3 BASIC16.88■□□□□ 0.29
COL28A1Q2UY09 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC16.88■□□□□ 0.29
COL28A1Q2UY09 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC16.88■□□□□ 0.29
COL28A1Q2UY09 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC16.88■□□□□ 0.29
COL28A1Q2UY09 ANKRD20A8P-203ENST00000641373 517 ntBASIC16.88■□□□□ 0.29
COL28A1Q2UY09 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
COL28A1Q2UY09 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
COL28A1Q2UY09 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
COL28A1Q2UY09 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
COL28A1Q2UY09 AC135050.7-201ENST00000624508 2218 ntBASIC16.88■□□□□ 0.29
COL28A1Q2UY09 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
COL28A1Q2UY09 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
COL28A1Q2UY09 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC16.88■□□□□ 0.29
COL28A1Q2UY09 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
COL28A1Q2UY09 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
COL28A1Q2UY09 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
COL28A1Q2UY09 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
COL28A1Q2UY09 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC16.87■□□□□ 0.29
COL28A1Q2UY09 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC16.87■□□□□ 0.29
COL28A1Q2UY09 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
COL28A1Q2UY09 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC16.87■□□□□ 0.29
COL28A1Q2UY09 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
COL28A1Q2UY09 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
COL28A1Q2UY09 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
COL28A1Q2UY09 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
COL28A1Q2UY09 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC16.87■□□□□ 0.29
COL28A1Q2UY09 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC16.87■□□□□ 0.29
COL28A1Q2UY09 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
COL28A1Q2UY09 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC16.87■□□□□ 0.29
COL28A1Q2UY09 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC16.87■□□□□ 0.29
COL28A1Q2UY09 ATP6V0CP3-201ENST00000417255 467 ntBASIC16.87■□□□□ 0.29
COL28A1Q2UY09 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC16.87■□□□□ 0.29
COL28A1Q2UY09 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
COL28A1Q2UY09 RNF151-202ENST00000569210 853 ntTSL 2 BASIC16.87■□□□□ 0.29
COL28A1Q2UY09 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC16.87■□□□□ 0.29
COL28A1Q2UY09 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
COL28A1Q2UY09 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC16.87■□□□□ 0.29
COL28A1Q2UY09 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC16.87■□□□□ 0.29
COL28A1Q2UY09 AC092865.6-201ENST00000642101 219 ntBASIC16.87■□□□□ 0.29
COL28A1Q2UY09 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
COL28A1Q2UY09 ELL2P1-201ENST00000413990 1906 ntBASIC16.87■□□□□ 0.29
COL28A1Q2UY09 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC16.87■□□□□ 0.29
COL28A1Q2UY09 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
COL28A1Q2UY09 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
COL28A1Q2UY09 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC16.87■□□□□ 0.29
COL28A1Q2UY09 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
COL28A1Q2UY09 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
COL28A1Q2UY09 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
COL28A1Q2UY09 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC16.87■□□□□ 0.29
COL28A1Q2UY09 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
COL28A1Q2UY09 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
COL28A1Q2UY09 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC16.87■□□□□ 0.29
COL28A1Q2UY09 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms