Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SOX4Q06945 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
SOX4Q06945 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC18.73■□□□□ 0.59
SOX4Q06945 SLC25A6P5-201ENST00000435663 894 ntBASIC18.73■□□□□ 0.59
SOX4Q06945 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
SOX4Q06945 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC18.73■□□□□ 0.59
SOX4Q06945 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC18.73■□□□□ 0.59
SOX4Q06945 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC18.73■□□□□ 0.59
SOX4Q06945 TERC-201ENST00000602385 541 ntBASIC18.73■□□□□ 0.59
SOX4Q06945 AL353135.1-201ENST00000606729 504 ntBASIC18.73■□□□□ 0.59
SOX4Q06945 AC027601.4-201ENST00000611259 610 ntBASIC18.73■□□□□ 0.59
SOX4Q06945 LINC01451-201ENST00000623792 534 ntBASIC18.73■□□□□ 0.59
SOX4Q06945 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
SOX4Q06945 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
SOX4Q06945 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC18.73■□□□□ 0.59
SOX4Q06945 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC18.73■□□□□ 0.59
SOX4Q06945 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SOX4Q06945 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC18.73■□□□□ 0.59
SOX4Q06945 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC18.73■□□□□ 0.59
SOX4Q06945 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SOX4Q06945 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SOX4Q06945 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC18.72■□□□□ 0.59
SOX4Q06945 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
SOX4Q06945 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SOX4Q06945 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SOX4Q06945 AC046185.3-201ENST00000623228 1824 ntBASIC18.72■□□□□ 0.59
SOX4Q06945 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SOX4Q06945 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SOX4Q06945 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC18.72■□□□□ 0.59
SOX4Q06945 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SOX4Q06945 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC18.72■□□□□ 0.59
SOX4Q06945 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
SOX4Q06945 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SOX4Q06945 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SOX4Q06945 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SOX4Q06945 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SOX4Q06945 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC18.72■□□□□ 0.59
SOX4Q06945 AC007967.2-201ENST00000432613 625 ntBASIC18.72■□□□□ 0.59
SOX4Q06945 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC18.72■□□□□ 0.59
SOX4Q06945 AC108751.1-201ENST00000490852 363 ntBASIC18.72■□□□□ 0.59
SOX4Q06945 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC18.72■□□□□ 0.59
SOX4Q06945 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SOX4Q06945 AL139327.4-201ENST00000612362 153 ntBASIC18.72■□□□□ 0.59
SOX4Q06945 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC18.72■□□□□ 0.59
SOX4Q06945 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SOX4Q06945 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SOX4Q06945 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
SOX4Q06945 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC18.72■□□□□ 0.59
SOX4Q06945 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC18.72■□□□□ 0.59
SOX4Q06945 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC18.72■□□□□ 0.59
SOX4Q06945 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
SOX4Q06945 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC18.72■□□□□ 0.59
SOX4Q06945 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC18.72■□□□□ 0.59
SOX4Q06945 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
SOX4Q06945 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC18.72■□□□□ 0.59
SOX4Q06945 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC18.72■□□□□ 0.59
SOX4Q06945 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SOX4Q06945 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
SOX4Q06945 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC18.71■□□□□ 0.59
SOX4Q06945 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
SOX4Q06945 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
SOX4Q06945 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC18.71■□□□□ 0.59
SOX4Q06945 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
SOX4Q06945 AL135999.2-201ENST00000622438 1686 ntBASIC18.71■□□□□ 0.59
SOX4Q06945 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC18.71■□□□□ 0.59
SOX4Q06945 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC18.71■□□□□ 0.59
SOX4Q06945 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC18.71■□□□□ 0.59
SOX4Q06945 MED15P5-201ENST00000423150 992 ntBASIC18.71■□□□□ 0.59
SOX4Q06945 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC18.71■□□□□ 0.59
SOX4Q06945 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
SOX4Q06945 TK1-204ENST00000590430 683 ntTSL 3 BASIC18.71■□□□□ 0.59
SOX4Q06945 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SOX4Q06945 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SOX4Q06945 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SOX4Q06945 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SOX4Q06945 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SOX4Q06945 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
SOX4Q06945 PMS2P7-201ENST00000506558 1336 ntBASIC18.71■□□□□ 0.59
SOX4Q06945 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC18.71■□□□□ 0.59
SOX4Q06945 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC18.71■□□□□ 0.59
SOX4Q06945 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC18.71■□□□□ 0.58
SOX4Q06945 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.58
SOX4Q06945 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SOX4Q06945 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SOX4Q06945 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SOX4Q06945 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SOX4Q06945 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
SOX4Q06945 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SOX4Q06945 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SOX4Q06945 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SOX4Q06945 ENSA-206ENST00000361631 725 ntTSL 2 BASIC18.7■□□□□ 0.58
SOX4Q06945 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC18.7■□□□□ 0.58
SOX4Q06945 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC18.7■□□□□ 0.58
SOX4Q06945 RPS15P9-201ENST00000494093 319 ntBASIC18.7■□□□□ 0.58
SOX4Q06945 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC18.7■□□□□ 0.58
SOX4Q06945 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC18.7■□□□□ 0.58
SOX4Q06945 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC18.7■□□□□ 0.58
SOX4Q06945 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC18.7■□□□□ 0.58
SOX4Q06945 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC18.7■□□□□ 0.58
SOX4Q06945 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms