Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HDAC4P56524 AC122714.2-201ENST00000502787 707 ntBASIC18.38■□□□□ 0.53
HDAC4P56524 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC18.38■□□□□ 0.53
HDAC4P56524 AC012615.1-201ENST00000565797 1299 ntBASIC18.38■□□□□ 0.53
HDAC4P56524 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
HDAC4P56524 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HDAC4P56524 AC019129.2-201ENST00000609837 1235 ntBASIC18.38■□□□□ 0.53
HDAC4P56524 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HDAC4P56524 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HDAC4P56524 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC18.38■□□□□ 0.53
HDAC4P56524 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HDAC4P56524 BOC-212ENST00000485230 2173 ntTSL 2 BASIC18.38■□□□□ 0.53
HDAC4P56524 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC18.38■□□□□ 0.53
HDAC4P56524 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HDAC4P56524 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HDAC4P56524 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HDAC4P56524 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC18.38■□□□□ 0.53
HDAC4P56524 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HDAC4P56524 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC18.37■□□□□ 0.53
HDAC4P56524 SIRPAP1-201ENST00000448467 1770 ntBASIC18.37■□□□□ 0.53
HDAC4P56524 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
HDAC4P56524 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
HDAC4P56524 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
HDAC4P56524 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
HDAC4P56524 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
HDAC4P56524 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
HDAC4P56524 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
HDAC4P56524 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
HDAC4P56524 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
HDAC4P56524 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC18.37■□□□□ 0.53
HDAC4P56524 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC18.37■□□□□ 0.53
HDAC4P56524 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC18.37■□□□□ 0.53
HDAC4P56524 FAM220CP-201ENST00000395253 831 ntBASIC18.37■□□□□ 0.53
HDAC4P56524 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC18.37■□□□□ 0.53
HDAC4P56524 MINOS1P3-201ENST00000457048 203 ntBASIC18.37■□□□□ 0.53
HDAC4P56524 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC18.37■□□□□ 0.53
HDAC4P56524 NMU-205ENST00000511469 756 ntTSL 3 BASIC18.37■□□□□ 0.53
HDAC4P56524 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC18.37■□□□□ 0.53
HDAC4P56524 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC18.37■□□□□ 0.53
HDAC4P56524 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC18.37■□□□□ 0.53
HDAC4P56524 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
HDAC4P56524 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC18.37■□□□□ 0.53
HDAC4P56524 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
HDAC4P56524 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
HDAC4P56524 AL138688.1-201ENST00000624851 1594 ntBASIC18.37■□□□□ 0.53
HDAC4P56524 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
HDAC4P56524 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
HDAC4P56524 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC18.37■□□□□ 0.53
HDAC4P56524 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC18.37■□□□□ 0.53
HDAC4P56524 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
HDAC4P56524 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
HDAC4P56524 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
HDAC4P56524 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC18.36■□□□□ 0.53
HDAC4P56524 EML3-212ENST00000494176 2901 ntTSL 2 BASIC18.36■□□□□ 0.53
HDAC4P56524 EML3-216ENST00000529309 2909 ntTSL 2 BASIC18.36■□□□□ 0.53
HDAC4P56524 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
HDAC4P56524 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
HDAC4P56524 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC18.36■□□□□ 0.53
HDAC4P56524 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
HDAC4P56524 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
HDAC4P56524 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
HDAC4P56524 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
HDAC4P56524 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
HDAC4P56524 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC18.36■□□□□ 0.53
HDAC4P56524 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
HDAC4P56524 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC18.36■□□□□ 0.53
HDAC4P56524 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
HDAC4P56524 AC104819.1-201ENST00000504587 486 ntBASIC18.36■□□□□ 0.53
HDAC4P56524 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC18.36■□□□□ 0.53
HDAC4P56524 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
HDAC4P56524 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC18.36■□□□□ 0.53
HDAC4P56524 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
HDAC4P56524 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC18.36■□□□□ 0.53
HDAC4P56524 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
HDAC4P56524 AC139713.2-201ENST00000641328 2723 ntBASIC18.36■□□□□ 0.53
HDAC4P56524 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
HDAC4P56524 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC18.36■□□□□ 0.53
HDAC4P56524 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
HDAC4P56524 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
HDAC4P56524 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
HDAC4P56524 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
HDAC4P56524 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HDAC4P56524 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HDAC4P56524 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC18.35■□□□□ 0.53
HDAC4P56524 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC18.35■□□□□ 0.53
HDAC4P56524 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
HDAC4P56524 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC18.35■□□□□ 0.53
HDAC4P56524 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HDAC4P56524 AL049757.1-201ENST00000616842 1596 ntBASIC18.35■□□□□ 0.53
HDAC4P56524 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC18.35■□□□□ 0.53
HDAC4P56524 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HDAC4P56524 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC18.35■□□□□ 0.53
HDAC4P56524 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HDAC4P56524 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HDAC4P56524 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HDAC4P56524 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
HDAC4P56524 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
HDAC4P56524 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
HDAC4P56524 AC002558.1-201ENST00000488906 803 ntBASIC18.35■□□□□ 0.53
HDAC4P56524 AC096582.2-201ENST00000510860 516 ntBASIC18.35■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms