Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
HMGA1P17096 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HMGA1P17096 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
HMGA1P17096 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
HMGA1P17096 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC18.16■□□□□ 0.5
HMGA1P17096 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
HMGA1P17096 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
HMGA1P17096 HNRNPA1P28-201ENST00000424481 961 ntBASIC18.16■□□□□ 0.5
HMGA1P17096 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC18.16■□□□□ 0.5
HMGA1P17096 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC18.16■□□□□ 0.5
HMGA1P17096 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC18.16■□□□□ 0.5
HMGA1P17096 COX5A-206ENST00000568783 571 ntTSL 3 BASIC18.16■□□□□ 0.5
HMGA1P17096 AC002347.1-201ENST00000569543 541 ntBASIC18.16■□□□□ 0.5
HMGA1P17096 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC18.16■□□□□ 0.5
HMGA1P17096 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
HMGA1P17096 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HMGA1P17096 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
HMGA1P17096 AC012317.2-201ENST00000623305 2251 ntBASIC18.16■□□□□ 0.5
HMGA1P17096 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
HMGA1P17096 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
HMGA1P17096 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HMGA1P17096 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC18.15■□□□□ 0.5
HMGA1P17096 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC18.15■□□□□ 0.5
HMGA1P17096 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HMGA1P17096 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
HMGA1P17096 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HMGA1P17096 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HMGA1P17096 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC18.15■□□□□ 0.5
HMGA1P17096 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HMGA1P17096 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
HMGA1P17096 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
HMGA1P17096 IGLL3P-201ENST00000412472 434 ntBASIC18.15■□□□□ 0.5
HMGA1P17096 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC18.15■□□□□ 0.5
HMGA1P17096 SLC25A6P5-201ENST00000435663 894 ntBASIC18.15■□□□□ 0.5
HMGA1P17096 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC18.15■□□□□ 0.5
HMGA1P17096 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC18.15■□□□□ 0.5
HMGA1P17096 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
HMGA1P17096 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC18.15■□□□□ 0.5
HMGA1P17096 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
HMGA1P17096 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
HMGA1P17096 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC18.15■□□□□ 0.5
HMGA1P17096 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC18.15■□□□□ 0.5
HMGA1P17096 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC18.15■□□□□ 0.5
HMGA1P17096 TK1-204ENST00000590430 683 ntTSL 3 BASIC18.15■□□□□ 0.5
HMGA1P17096 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
HMGA1P17096 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
HMGA1P17096 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
HMGA1P17096 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
HMGA1P17096 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
HMGA1P17096 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HMGA1P17096 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HMGA1P17096 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
HMGA1P17096 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC18.15■□□□□ 0.5
HMGA1P17096 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
HMGA1P17096 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
HMGA1P17096 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
HMGA1P17096 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HMGA1P17096 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HMGA1P17096 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC18.15■□□□□ 0.5
HMGA1P17096 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HMGA1P17096 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
HMGA1P17096 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
HMGA1P17096 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
HMGA1P17096 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
HMGA1P17096 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
HMGA1P17096 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
HMGA1P17096 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
HMGA1P17096 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
HMGA1P17096 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC18.14■□□□□ 0.49
HMGA1P17096 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
HMGA1P17096 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
HMGA1P17096 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
HMGA1P17096 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
HMGA1P17096 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC18.14■□□□□ 0.49
HMGA1P17096 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC18.14■□□□□ 0.49
HMGA1P17096 MRPL20P1-201ENST00000400819 433 ntBASIC18.14■□□□□ 0.49
HMGA1P17096 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC18.14■□□□□ 0.49
HMGA1P17096 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC18.14■□□□□ 0.49
HMGA1P17096 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
HMGA1P17096 AC018845.2-201ENST00000568326 409 ntBASIC18.14■□□□□ 0.49
HMGA1P17096 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC18.14■□□□□ 0.49
HMGA1P17096 AC010654.1-201ENST00000615722 808 ntBASIC18.14■□□□□ 0.49
HMGA1P17096 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
HMGA1P17096 AC092865.6-201ENST00000642101 219 ntBASIC18.14■□□□□ 0.49
HMGA1P17096 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC18.14■□□□□ 0.49
HMGA1P17096 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC18.14■□□□□ 0.49
HMGA1P17096 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC18.14■□□□□ 0.49
HMGA1P17096 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
HMGA1P17096 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
HMGA1P17096 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
HMGA1P17096 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC18.14■□□□□ 0.49
HMGA1P17096 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
HMGA1P17096 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
HMGA1P17096 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC18.13■□□□□ 0.49
HMGA1P17096 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC18.13■□□□□ 0.49
HMGA1P17096 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HMGA1P17096 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
HMGA1P17096 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HMGA1P17096 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
HMGA1P17096 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC18.13■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms