Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CXCL1P09341 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC13.67□□□□□ -0.22
CXCL1P09341 RNF216P1-203ENST00000404404 2427 ntBASIC13.67□□□□□ -0.22
CXCL1P09341 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC13.67□□□□□ -0.22
CXCL1P09341 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
CXCL1P09341 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC13.67□□□□□ -0.22
CXCL1P09341 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CXCL1P09341 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
CXCL1P09341 CROCCP5-201ENST00000436658 830 ntBASIC13.67□□□□□ -0.22
CXCL1P09341 Z85996.1-201ENST00000494644 937 ntBASIC13.67□□□□□ -0.22
CXCL1P09341 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
CXCL1P09341 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC13.67□□□□□ -0.22
CXCL1P09341 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CXCL1P09341 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CXCL1P09341 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CXCL1P09341 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CXCL1P09341 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
CXCL1P09341 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CXCL1P09341 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
CXCL1P09341 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
CXCL1P09341 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CXCL1P09341 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC13.67□□□□□ -0.22
CXCL1P09341 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
CXCL1P09341 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CXCL1P09341 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CXCL1P09341 NFATC4-221ENST00000555453 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
CXCL1P09341 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
CXCL1P09341 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC13.66□□□□□ -0.22
CXCL1P09341 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC13.66□□□□□ -0.22
CXCL1P09341 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC13.66□□□□□ -0.22
CXCL1P09341 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC13.66□□□□□ -0.22
CXCL1P09341 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CXCL1P09341 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CXCL1P09341 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC13.66□□□□□ -0.22
CXCL1P09341 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC13.66□□□□□ -0.22
CXCL1P09341 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC13.66□□□□□ -0.22
CXCL1P09341 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC13.66□□□□□ -0.22
CXCL1P09341 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
CXCL1P09341 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
CXCL1P09341 LINC00304-203ENST00000565008 1864 ntBASIC13.66□□□□□ -0.22
CXCL1P09341 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
CXCL1P09341 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CXCL1P09341 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
CXCL1P09341 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
CXCL1P09341 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
CXCL1P09341 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CXCL1P09341 PTPA-216ENST00000432651 857 ntTSL 2 BASIC13.66□□□□□ -0.22
CXCL1P09341 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
CXCL1P09341 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC13.66□□□□□ -0.22
CXCL1P09341 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC13.66□□□□□ -0.22
CXCL1P09341 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CXCL1P09341 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
CXCL1P09341 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC13.66□□□□□ -0.22
CXCL1P09341 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CXCL1P09341 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CXCL1P09341 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC13.66□□□□□ -0.22
CXCL1P09341 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
CXCL1P09341 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CXCL1P09341 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC13.66□□□□□ -0.22
CXCL1P09341 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC13.66□□□□□ -0.22
CXCL1P09341 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
CXCL1P09341 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC13.66□□□□□ -0.22
CXCL1P09341 EYA4-205ENST00000430974 2364 ntTSL 2 BASIC13.66□□□□□ -0.22
CXCL1P09341 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
CXCL1P09341 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC13.66□□□□□ -0.22
CXCL1P09341 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
CXCL1P09341 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC13.66□□□□□ -0.22
CXCL1P09341 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC13.66□□□□□ -0.22
CXCL1P09341 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
CXCL1P09341 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC13.66□□□□□ -0.22
CXCL1P09341 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
CXCL1P09341 HTR7P1-201ENST00000538670 1336 ntBASIC13.65□□□□□ -0.22
CXCL1P09341 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CXCL1P09341 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC13.65□□□□□ -0.22
CXCL1P09341 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC13.65□□□□□ -0.22
CXCL1P09341 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CXCL1P09341 KRT8P11-201ENST00000409686 1436 ntBASIC13.65□□□□□ -0.22
CXCL1P09341 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
CXCL1P09341 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
CXCL1P09341 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CXCL1P09341 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC13.65□□□□□ -0.22
CXCL1P09341 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC13.65□□□□□ -0.22
CXCL1P09341 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC13.65□□□□□ -0.22
CXCL1P09341 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CXCL1P09341 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
CXCL1P09341 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC13.65□□□□□ -0.22
CXCL1P09341 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC13.65□□□□□ -0.22
CXCL1P09341 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
CXCL1P09341 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC13.65□□□□□ -0.22
CXCL1P09341 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
CXCL1P09341 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CXCL1P09341 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CXCL1P09341 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
CXCL1P09341 POM121L13P-201ENST00000422362 380 ntBASIC13.65□□□□□ -0.22
CXCL1P09341 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC13.65□□□□□ -0.22
CXCL1P09341 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
CXCL1P09341 Six3os1_6.1-201ENST00000620790 196 ntBASIC13.65□□□□□ -0.22
CXCL1P09341 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC13.65□□□□□ -0.22
CXCL1P09341 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC13.65□□□□□ -0.22
CXCL1P09341 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC13.65□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms