Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC17.14■□□□□ 0.33
TNFP01375 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC17.14■□□□□ 0.33
TNFP01375 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
TNFP01375 AC097637.2-201ENST00000624096 1997 ntBASIC17.14■□□□□ 0.33
TNFP01375 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC17.14■□□□□ 0.33
TNFP01375 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
TNFP01375 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
TNFP01375 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TNFP01375 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
TNFP01375 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TNFP01375 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TNFP01375 AC006504.4-201ENST00000592118 1568 ntBASIC17.14■□□□□ 0.33
TNFP01375 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
TNFP01375 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
TNFP01375 OR6D1P-202ENST00000641007 5290 ntBASIC17.14■□□□□ 0.33
TNFP01375 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TNFP01375 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC17.14■□□□□ 0.33
TNFP01375 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
TNFP01375 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC17.14■□□□□ 0.33
TNFP01375 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC17.14■□□□□ 0.33
TNFP01375 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC17.14■□□□□ 0.33
TNFP01375 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TNFP01375 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC17.13■□□□□ 0.33
TNFP01375 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TNFP01375 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TNFP01375 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
TNFP01375 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
TNFP01375 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC17.13■□□□□ 0.33
TNFP01375 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
TNFP01375 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TNFP01375 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC17.13■□□□□ 0.33
TNFP01375 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
TNFP01375 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
TNFP01375 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
TNFP01375 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
TNFP01375 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TNFP01375 METTL26-205ENST00000397666 726 ntTSL 2 BASIC17.13■□□□□ 0.33
TNFP01375 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC17.13■□□□□ 0.33
TNFP01375 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC17.13■□□□□ 0.33
TNFP01375 AC108751.1-201ENST00000490852 363 ntBASIC17.13■□□□□ 0.33
TNFP01375 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
TNFP01375 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
TNFP01375 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC17.13■□□□□ 0.33
TNFP01375 AL139424.1-201ENST00000607572 797 ntBASIC17.13■□□□□ 0.33
TNFP01375 AC006538.3-201ENST00000612495 578 ntBASIC17.13■□□□□ 0.33
TNFP01375 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC17.13■□□□□ 0.33
TNFP01375 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
TNFP01375 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TNFP01375 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TNFP01375 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TNFP01375 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC17.13■□□□□ 0.33
TNFP01375 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC17.13■□□□□ 0.33
TNFP01375 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TNFP01375 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
TNFP01375 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
TNFP01375 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TNFP01375 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC17.12■□□□□ 0.33
TNFP01375 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC17.12■□□□□ 0.33
TNFP01375 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC17.12■□□□□ 0.33
TNFP01375 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC17.12■□□□□ 0.33
TNFP01375 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
TNFP01375 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
TNFP01375 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
TNFP01375 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC17.12■□□□□ 0.33
TNFP01375 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TNFP01375 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC17.12■□□□□ 0.33
TNFP01375 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC17.12■□□□□ 0.33
TNFP01375 ELK2BP-201ENST00000415014 1224 ntBASIC17.12■□□□□ 0.33
TNFP01375 COX10-202ENST00000429152 875 ntTSL 2 BASIC17.12■□□□□ 0.33
TNFP01375 HS6ST1P1-201ENST00000481504 1234 ntBASIC17.12■□□□□ 0.33
TNFP01375 RNA5SP416-201ENST00000516838 111 ntBASIC17.12■□□□□ 0.33
TNFP01375 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
TNFP01375 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC17.12■□□□□ 0.33
TNFP01375 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TNFP01375 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
TNFP01375 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TNFP01375 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TNFP01375 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TNFP01375 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC17.12■□□□□ 0.33
TNFP01375 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
TNFP01375 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TNFP01375 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TNFP01375 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TNFP01375 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC17.12■□□□□ 0.33
TNFP01375 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TNFP01375 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TNFP01375 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC17.12■□□□□ 0.33
TNFP01375 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TNFP01375 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TNFP01375 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TNFP01375 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC17.12■□□□□ 0.33
TNFP01375 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC17.11■□□□□ 0.33
TNFP01375 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
TNFP01375 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC17.11■□□□□ 0.33
TNFP01375 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
TNFP01375 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
TNFP01375 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TNFP01375 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
TNFP01375 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
TNFP01375 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC17.11■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms