Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
SGCEO43556 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
SGCEO43556 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC15.6■□□□□ 0.09
SGCEO43556 AC084018.2-201ENST00000613093 2607 ntBASIC15.6■□□□□ 0.09
SGCEO43556 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
SGCEO43556 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
SGCEO43556 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
SGCEO43556 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
SGCEO43556 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
SGCEO43556 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
SGCEO43556 AL031133.1-201ENST00000406807 723 ntBASIC15.6■□□□□ 0.09
SGCEO43556 DDX43P3-201ENST00000441064 443 ntBASIC15.6■□□□□ 0.09
SGCEO43556 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC15.6■□□□□ 0.09
SGCEO43556 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
SGCEO43556 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC15.6■□□□□ 0.09
SGCEO43556 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
SGCEO43556 AC068472.1-201ENST00000474589 881 ntBASIC15.6■□□□□ 0.09
SGCEO43556 GUSBP12-201ENST00000513727 720 ntBASIC15.6■□□□□ 0.09
SGCEO43556 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC15.6■□□□□ 0.09
SGCEO43556 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC15.6■□□□□ 0.09
SGCEO43556 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC15.6■□□□□ 0.09
SGCEO43556 AC011498.5-201ENST00000592027 486 ntBASIC15.6■□□□□ 0.09
SGCEO43556 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
SGCEO43556 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
SGCEO43556 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC15.6■□□□□ 0.09
SGCEO43556 NDUFV2-AS1-203ENST00000608008 779 ntBASIC15.6■□□□□ 0.09
SGCEO43556 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
SGCEO43556 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC15.6■□□□□ 0.09
SGCEO43556 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC15.6■□□□□ 0.09
SGCEO43556 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC15.6■□□□□ 0.09
SGCEO43556 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
SGCEO43556 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC15.6■□□□□ 0.09
SGCEO43556 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
SGCEO43556 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC15.59■□□□□ 0.09
SGCEO43556 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC15.59■□□□□ 0.09
SGCEO43556 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
SGCEO43556 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
SGCEO43556 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC15.59■□□□□ 0.09
SGCEO43556 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC15.59■□□□□ 0.09
SGCEO43556 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC15.59■□□□□ 0.09
SGCEO43556 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
SGCEO43556 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC15.59■□□□□ 0.09
SGCEO43556 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC15.59■□□□□ 0.09
SGCEO43556 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC15.59■□□□□ 0.09
SGCEO43556 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
SGCEO43556 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
SGCEO43556 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
SGCEO43556 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
SGCEO43556 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
SGCEO43556 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
SGCEO43556 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC15.59■□□□□ 0.09
SGCEO43556 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC15.59■□□□□ 0.09
SGCEO43556 CD320-202ENST00000537716 1119 ntTSL 2 BASIC15.59■□□□□ 0.09
SGCEO43556 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC15.59■□□□□ 0.09
SGCEO43556 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
SGCEO43556 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
SGCEO43556 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC15.59■□□□□ 0.09
SGCEO43556 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
SGCEO43556 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
SGCEO43556 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC15.59■□□□□ 0.09
SGCEO43556 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
SGCEO43556 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
SGCEO43556 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
SGCEO43556 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC15.59■□□□□ 0.09
SGCEO43556 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
SGCEO43556 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
SGCEO43556 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
SGCEO43556 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
SGCEO43556 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
SGCEO43556 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC15.59■□□□□ 0.09
SGCEO43556 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
SGCEO43556 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
SGCEO43556 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
SGCEO43556 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.09
SGCEO43556 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC15.58■□□□□ 0.09
SGCEO43556 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.08
SGCEO43556 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
SGCEO43556 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
SGCEO43556 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC15.58■□□□□ 0.08
SGCEO43556 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
SGCEO43556 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
SGCEO43556 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.08
SGCEO43556 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC15.58■□□□□ 0.08
SGCEO43556 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC15.58■□□□□ 0.08
SGCEO43556 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
SGCEO43556 AC087388.1-201ENST00000571370 1112 ntBASIC15.58■□□□□ 0.08
SGCEO43556 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
SGCEO43556 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC15.58■□□□□ 0.08
SGCEO43556 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
SGCEO43556 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC15.58■□□□□ 0.08
SGCEO43556 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC15.58■□□□□ 0.08
SGCEO43556 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC15.58■□□□□ 0.08
SGCEO43556 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC15.58■□□□□ 0.08
SGCEO43556 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC15.58■□□□□ 0.08
SGCEO43556 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
SGCEO43556 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
SGCEO43556 AL355312.1-201ENST00000407115 2176 ntBASIC15.58■□□□□ 0.08
SGCEO43556 PKD1P5-201ENST00000532415 10291 ntBASIC15.58■□□□□ 0.08
SGCEO43556 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC15.58■□□□□ 0.08
SGCEO43556 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC15.57■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 41.7 ms