Protein–RNA interactions for Protein: O00570

SOX1, Transcription factor SOX-1, humanhuman

Predicted RBP Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX1O00570 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
SOX1O00570 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SOX1O00570 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC18.54■□□□□ 0.56
SOX1O00570 HNRNPA3P1-201ENST00000401429 1139 ntBASIC18.54■□□□□ 0.56
SOX1O00570 HNRNPA3P5-201ENST00000455201 833 ntBASIC18.54■□□□□ 0.56
SOX1O00570 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
SOX1O00570 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
SOX1O00570 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
SOX1O00570 AC092667.1-201ENST00000434301 2586 ntBASIC18.54■□□□□ 0.56
SOX1O00570 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
SOX1O00570 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC18.54■□□□□ 0.56
SOX1O00570 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SOX1O00570 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SOX1O00570 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SOX1O00570 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
SOX1O00570 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC18.54■□□□□ 0.56
SOX1O00570 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SOX1O00570 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
SOX1O00570 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SOX1O00570 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC18.53■□□□□ 0.56
SOX1O00570 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC18.53■□□□□ 0.56
SOX1O00570 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SOX1O00570 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
SOX1O00570 AC018445.3-201ENST00000624177 1945 ntBASIC18.53■□□□□ 0.56
SOX1O00570 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SOX1O00570 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
SOX1O00570 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SOX1O00570 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
SOX1O00570 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
SOX1O00570 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC18.53■□□□□ 0.56
SOX1O00570 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
SOX1O00570 AC092506.1-202ENST00000401022 528 ntBASIC18.53■□□□□ 0.56
SOX1O00570 AP006294.1-201ENST00000415407 339 ntBASIC18.53■□□□□ 0.56
SOX1O00570 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
SOX1O00570 AL353779.1-201ENST00000434793 351 ntBASIC18.53■□□□□ 0.56
SOX1O00570 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
SOX1O00570 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
SOX1O00570 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
SOX1O00570 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SOX1O00570 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC18.53■□□□□ 0.56
SOX1O00570 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
SOX1O00570 GABARAPL3-202ENST00000624044 1851 ntBASIC18.53■□□□□ 0.56
SOX1O00570 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
SOX1O00570 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
SOX1O00570 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC18.53■□□□□ 0.56
SOX1O00570 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC18.53■□□□□ 0.56
SOX1O00570 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SOX1O00570 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
SOX1O00570 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
SOX1O00570 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SOX1O00570 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
SOX1O00570 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
SOX1O00570 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC18.52■□□□□ 0.56
SOX1O00570 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
SOX1O00570 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
SOX1O00570 MPV17-208ENST00000405076 603 ntTSL 5 BASIC18.52■□□□□ 0.56
SOX1O00570 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC18.52■□□□□ 0.56
SOX1O00570 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC18.52■□□□□ 0.56
SOX1O00570 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC18.52■□□□□ 0.56
SOX1O00570 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
SOX1O00570 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC18.52■□□□□ 0.56
SOX1O00570 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC18.52■□□□□ 0.56
SOX1O00570 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
SOX1O00570 CD7-202ENST00000578509 925 ntTSL 3 BASIC18.52■□□□□ 0.56
SOX1O00570 AL512343.1-201ENST00000605837 169 ntBASIC18.52■□□□□ 0.56
SOX1O00570 SPDYE12P-201ENST00000618416 771 ntBASIC18.52■□□□□ 0.56
SOX1O00570 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SOX1O00570 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
SOX1O00570 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
SOX1O00570 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SOX1O00570 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC18.52■□□□□ 0.56
SOX1O00570 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.55
SOX1O00570 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.55
SOX1O00570 AC112907.3-201ENST00000577781 2400 ntBASIC18.52■□□□□ 0.55
SOX1O00570 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
SOX1O00570 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC18.52■□□□□ 0.55
SOX1O00570 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.55
SOX1O00570 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC18.52■□□□□ 0.55
SOX1O00570 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
SOX1O00570 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC18.51■□□□□ 0.55
SOX1O00570 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SOX1O00570 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC18.51■□□□□ 0.55
SOX1O00570 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SOX1O00570 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC18.51■□□□□ 0.55
SOX1O00570 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SOX1O00570 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SOX1O00570 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SOX1O00570 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SOX1O00570 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SOX1O00570 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
SOX1O00570 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SOX1O00570 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SOX1O00570 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC18.51■□□□□ 0.55
SOX1O00570 TPI1-206ENST00000488464 791 ntTSL 5 BASIC18.51■□□□□ 0.55
SOX1O00570 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC18.51■□□□□ 0.55
SOX1O00570 AC078852.2-201ENST00000504748 527 ntTSL 5 BASIC18.51■□□□□ 0.55
SOX1O00570 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
SOX1O00570 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC18.51■□□□□ 0.55
SOX1O00570 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SOX1O00570 STK19B-204ENST00000512515 211 ntBASIC18.51■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms