Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC18.39■□□□□ 0.53
PCDHA3Q9Y5H8 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC18.39■□□□□ 0.53
PCDHA3Q9Y5H8 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC18.39■□□□□ 0.53
PCDHA3Q9Y5H8 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
PCDHA3Q9Y5H8 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC18.39■□□□□ 0.53
PCDHA3Q9Y5H8 AMT-250ENST00000637682 1823 ntTSL 5 BASIC18.39■□□□□ 0.53
PCDHA3Q9Y5H8 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
PCDHA3Q9Y5H8 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PCDHA3Q9Y5H8 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
PCDHA3Q9Y5H8 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PCDHA3Q9Y5H8 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC18.39■□□□□ 0.53
PCDHA3Q9Y5H8 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PCDHA3Q9Y5H8 AC060834.1-201ENST00000443027 2032 ntBASIC18.39■□□□□ 0.53
PCDHA3Q9Y5H8 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC18.39■□□□□ 0.53
PCDHA3Q9Y5H8 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC18.39■□□□□ 0.53
PCDHA3Q9Y5H8 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC18.38■□□□□ 0.53
PCDHA3Q9Y5H8 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC18.38■□□□□ 0.53
PCDHA3Q9Y5H8 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC18.38■□□□□ 0.53
PCDHA3Q9Y5H8 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
PCDHA3Q9Y5H8 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
PCDHA3Q9Y5H8 AL118508.1-201ENST00000613502 2345 ntBASIC18.38■□□□□ 0.53
PCDHA3Q9Y5H8 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC18.38■□□□□ 0.53
PCDHA3Q9Y5H8 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC18.38■□□□□ 0.53
PCDHA3Q9Y5H8 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
PCDHA3Q9Y5H8 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC18.38■□□□□ 0.53
PCDHA3Q9Y5H8 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC18.38■□□□□ 0.53
PCDHA3Q9Y5H8 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
PCDHA3Q9Y5H8 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC18.38■□□□□ 0.53
PCDHA3Q9Y5H8 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC18.38■□□□□ 0.53
PCDHA3Q9Y5H8 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC18.38■□□□□ 0.53
PCDHA3Q9Y5H8 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
PCDHA3Q9Y5H8 AC006011.2-201ENST00000621313 1158 ntBASIC18.38■□□□□ 0.53
PCDHA3Q9Y5H8 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
PCDHA3Q9Y5H8 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
PCDHA3Q9Y5H8 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC18.38■□□□□ 0.53
PCDHA3Q9Y5H8 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
PCDHA3Q9Y5H8 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC18.38■□□□□ 0.53
PCDHA3Q9Y5H8 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
PCDHA3Q9Y5H8 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
PCDHA3Q9Y5H8 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
PCDHA3Q9Y5H8 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
PCDHA3Q9Y5H8 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
PCDHA3Q9Y5H8 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
PCDHA3Q9Y5H8 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
PCDHA3Q9Y5H8 Z83836.1-201ENST00000624605 1642 ntBASIC18.38■□□□□ 0.53
PCDHA3Q9Y5H8 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
PCDHA3Q9Y5H8 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PCDHA3Q9Y5H8 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
PCDHA3Q9Y5H8 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PCDHA3Q9Y5H8 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
PCDHA3Q9Y5H8 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
PCDHA3Q9Y5H8 AGGF1P2-201ENST00000426656 2106 ntBASIC18.37■□□□□ 0.53
PCDHA3Q9Y5H8 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
PCDHA3Q9Y5H8 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
PCDHA3Q9Y5H8 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
PCDHA3Q9Y5H8 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PCDHA3Q9Y5H8 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
PCDHA3Q9Y5H8 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
PCDHA3Q9Y5H8 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
PCDHA3Q9Y5H8 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
PCDHA3Q9Y5H8 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PCDHA3Q9Y5H8 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC18.37■□□□□ 0.53
PCDHA3Q9Y5H8 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
PCDHA3Q9Y5H8 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC18.37■□□□□ 0.53
PCDHA3Q9Y5H8 PON3-205ENST00000451904 1053 ntTSL 3 BASIC18.37■□□□□ 0.53
PCDHA3Q9Y5H8 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC18.37■□□□□ 0.53
PCDHA3Q9Y5H8 LY6E-213ENST00000522528 606 ntTSL 3 BASIC18.37■□□□□ 0.53
PCDHA3Q9Y5H8 TK1-204ENST00000590430 683 ntTSL 3 BASIC18.37■□□□□ 0.53
PCDHA3Q9Y5H8 WDR6-223ENST00000627177 207 ntTSL 2 BASIC18.37■□□□□ 0.53
PCDHA3Q9Y5H8 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
PCDHA3Q9Y5H8 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
PCDHA3Q9Y5H8 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PCDHA3Q9Y5H8 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
PCDHA3Q9Y5H8 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
PCDHA3Q9Y5H8 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PCDHA3Q9Y5H8 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
PCDHA3Q9Y5H8 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PCDHA3Q9Y5H8 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
PCDHA3Q9Y5H8 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
PCDHA3Q9Y5H8 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC18.37■□□□□ 0.53
PCDHA3Q9Y5H8 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC18.37■□□□□ 0.53
PCDHA3Q9Y5H8 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC18.37■□□□□ 0.53
PCDHA3Q9Y5H8 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC18.37■□□□□ 0.53
PCDHA3Q9Y5H8 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC18.37■□□□□ 0.53
PCDHA3Q9Y5H8 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PCDHA3Q9Y5H8 AC106886.4-201ENST00000623557 2502 ntBASIC18.37■□□□□ 0.53
PCDHA3Q9Y5H8 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC18.36■□□□□ 0.53
PCDHA3Q9Y5H8 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PCDHA3Q9Y5H8 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
PCDHA3Q9Y5H8 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PCDHA3Q9Y5H8 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PCDHA3Q9Y5H8 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PCDHA3Q9Y5H8 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PCDHA3Q9Y5H8 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PCDHA3Q9Y5H8 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PCDHA3Q9Y5H8 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PCDHA3Q9Y5H8 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC18.36■□□□□ 0.53
PCDHA3Q9Y5H8 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
PCDHA3Q9Y5H8 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
PCDHA3Q9Y5H8 SPDYE13P-201ENST00000445314 798 ntBASIC18.36■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms