Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 DBP-204ENST00000599385 709 ntTSL 3 BASIC14.27□□□□□ -0.13
FOXA2Q9Y261 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
FOXA2Q9Y261 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
FOXA2Q9Y261 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.13
FOXA2Q9Y261 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
FOXA2Q9Y261 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
FOXA2Q9Y261 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
FOXA2Q9Y261 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC14.27□□□□□ -0.13
FOXA2Q9Y261 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
FOXA2Q9Y261 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
FOXA2Q9Y261 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
FOXA2Q9Y261 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC14.27□□□□□ -0.13
FOXA2Q9Y261 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
FOXA2Q9Y261 TPR-209ENST00000613151 2478 ntTSL 5 BASIC14.26□□□□□ -0.13
FOXA2Q9Y261 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC14.26□□□□□ -0.13
FOXA2Q9Y261 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
FOXA2Q9Y261 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
FOXA2Q9Y261 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
FOXA2Q9Y261 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
FOXA2Q9Y261 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
FOXA2Q9Y261 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
FOXA2Q9Y261 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
FOXA2Q9Y261 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
FOXA2Q9Y261 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC14.26□□□□□ -0.13
FOXA2Q9Y261 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
FOXA2Q9Y261 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC14.26□□□□□ -0.13
FOXA2Q9Y261 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
FOXA2Q9Y261 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
FOXA2Q9Y261 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
FOXA2Q9Y261 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC14.26□□□□□ -0.13
FOXA2Q9Y261 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
FOXA2Q9Y261 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC14.26□□□□□ -0.13
FOXA2Q9Y261 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
FOXA2Q9Y261 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
FOXA2Q9Y261 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
FOXA2Q9Y261 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
FOXA2Q9Y261 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC14.26□□□□□ -0.13
FOXA2Q9Y261 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC14.26□□□□□ -0.13
FOXA2Q9Y261 RNF146-204ENST00000476956 884 ntTSL 2 BASIC14.26□□□□□ -0.13
FOXA2Q9Y261 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC14.26□□□□□ -0.13
FOXA2Q9Y261 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC14.26□□□□□ -0.13
FOXA2Q9Y261 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC14.26□□□□□ -0.13
FOXA2Q9Y261 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
FOXA2Q9Y261 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC14.26□□□□□ -0.13
FOXA2Q9Y261 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC14.26□□□□□ -0.13
FOXA2Q9Y261 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
FOXA2Q9Y261 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
FOXA2Q9Y261 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
FOXA2Q9Y261 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC14.26□□□□□ -0.13
FOXA2Q9Y261 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
FOXA2Q9Y261 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC14.26□□□□□ -0.13
FOXA2Q9Y261 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
FOXA2Q9Y261 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
FOXA2Q9Y261 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC14.26□□□□□ -0.13
FOXA2Q9Y261 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
FOXA2Q9Y261 AC012313.1-201ENST00000593393 3059 ntBASIC14.26□□□□□ -0.13
FOXA2Q9Y261 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
FOXA2Q9Y261 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
FOXA2Q9Y261 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
FOXA2Q9Y261 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
FOXA2Q9Y261 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
FOXA2Q9Y261 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
FOXA2Q9Y261 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
FOXA2Q9Y261 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC14.25□□□□□ -0.13
FOXA2Q9Y261 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC14.25□□□□□ -0.13
FOXA2Q9Y261 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC14.25□□□□□ -0.13
FOXA2Q9Y261 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
FOXA2Q9Y261 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
FOXA2Q9Y261 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
FOXA2Q9Y261 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC14.25□□□□□ -0.13
FOXA2Q9Y261 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC14.25□□□□□ -0.13
FOXA2Q9Y261 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
FOXA2Q9Y261 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC14.25□□□□□ -0.13
FOXA2Q9Y261 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
FOXA2Q9Y261 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
FOXA2Q9Y261 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC14.25□□□□□ -0.13
FOXA2Q9Y261 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
FOXA2Q9Y261 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC14.25□□□□□ -0.13
FOXA2Q9Y261 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
FOXA2Q9Y261 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
FOXA2Q9Y261 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC14.25□□□□□ -0.13
FOXA2Q9Y261 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC14.25□□□□□ -0.13
FOXA2Q9Y261 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
FOXA2Q9Y261 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC14.25□□□□□ -0.13
FOXA2Q9Y261 SPDYE13P-201ENST00000445314 798 ntBASIC14.25□□□□□ -0.13
FOXA2Q9Y261 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
FOXA2Q9Y261 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC14.25□□□□□ -0.13
FOXA2Q9Y261 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC14.25□□□□□ -0.13
FOXA2Q9Y261 NT5C-211ENST00000582170 653 ntTSL 3 BASIC14.25□□□□□ -0.13
FOXA2Q9Y261 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC14.25□□□□□ -0.13
FOXA2Q9Y261 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
FOXA2Q9Y261 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
FOXA2Q9Y261 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC14.25□□□□□ -0.13
FOXA2Q9Y261 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
FOXA2Q9Y261 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC14.25□□□□□ -0.13
FOXA2Q9Y261 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC14.25□□□□□ -0.13
FOXA2Q9Y261 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC14.25□□□□□ -0.13
FOXA2Q9Y261 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC14.25□□□□□ -0.13
FOXA2Q9Y261 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
FOXA2Q9Y261 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms