Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC18.13■□□□□ 0.49
VPS28Q9UK41 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
VPS28Q9UK41 SLC25A6P5-201ENST00000435663 894 ntBASIC18.13■□□□□ 0.49
VPS28Q9UK41 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC18.13■□□□□ 0.49
VPS28Q9UK41 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VPS28Q9UK41 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC18.13■□□□□ 0.49
VPS28Q9UK41 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC18.13■□□□□ 0.49
VPS28Q9UK41 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VPS28Q9UK41 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC18.13■□□□□ 0.49
VPS28Q9UK41 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VPS28Q9UK41 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VPS28Q9UK41 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VPS28Q9UK41 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
VPS28Q9UK41 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC18.12■□□□□ 0.49
VPS28Q9UK41 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
VPS28Q9UK41 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
VPS28Q9UK41 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC18.12■□□□□ 0.49
VPS28Q9UK41 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC18.12■□□□□ 0.49
VPS28Q9UK41 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC18.12■□□□□ 0.49
VPS28Q9UK41 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC18.12■□□□□ 0.49
VPS28Q9UK41 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
VPS28Q9UK41 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
VPS28Q9UK41 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
VPS28Q9UK41 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
VPS28Q9UK41 AC079781.3-201ENST00000449110 356 ntBASIC18.12■□□□□ 0.49
VPS28Q9UK41 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC18.12■□□□□ 0.49
VPS28Q9UK41 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC18.12■□□□□ 0.49
VPS28Q9UK41 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC18.12■□□□□ 0.49
VPS28Q9UK41 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC18.12■□□□□ 0.49
VPS28Q9UK41 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
VPS28Q9UK41 LINC00896-202ENST00000609602 2128 ntBASIC18.12■□□□□ 0.49
VPS28Q9UK41 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC18.12■□□□□ 0.49
VPS28Q9UK41 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC18.12■□□□□ 0.49
VPS28Q9UK41 AL031008.1-201ENST00000619963 541 ntBASIC18.12■□□□□ 0.49
VPS28Q9UK41 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
VPS28Q9UK41 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
VPS28Q9UK41 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC18.12■□□□□ 0.49
VPS28Q9UK41 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
VPS28Q9UK41 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
VPS28Q9UK41 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
VPS28Q9UK41 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC18.12■□□□□ 0.49
VPS28Q9UK41 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC18.12■□□□□ 0.49
VPS28Q9UK41 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC18.12■□□□□ 0.49
VPS28Q9UK41 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
VPS28Q9UK41 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC18.12■□□□□ 0.49
VPS28Q9UK41 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
VPS28Q9UK41 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
VPS28Q9UK41 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC18.12■□□□□ 0.49
VPS28Q9UK41 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
VPS28Q9UK41 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
VPS28Q9UK41 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
VPS28Q9UK41 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC18.11■□□□□ 0.49
VPS28Q9UK41 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
VPS28Q9UK41 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
VPS28Q9UK41 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
VPS28Q9UK41 FST-202ENST00000396947 2538 ntTSL 5 BASIC18.11■□□□□ 0.49
VPS28Q9UK41 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC18.11■□□□□ 0.49
VPS28Q9UK41 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
VPS28Q9UK41 COX5BP2-201ENST00000392354 334 ntBASIC18.11■□□□□ 0.49
VPS28Q9UK41 CTNS-203ENST00000399306 803 ntTSL 3 BASIC18.11■□□□□ 0.49
VPS28Q9UK41 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC18.11■□□□□ 0.49
VPS28Q9UK41 AC026396.1-201ENST00000419388 421 ntBASIC18.11■□□□□ 0.49
VPS28Q9UK41 PON3-205ENST00000451904 1053 ntTSL 3 BASIC18.11■□□□□ 0.49
VPS28Q9UK41 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC18.11■□□□□ 0.49
VPS28Q9UK41 AC122714.2-201ENST00000502787 707 ntBASIC18.11■□□□□ 0.49
VPS28Q9UK41 AF238378.1-201ENST00000526806 358 ntBASIC18.11■□□□□ 0.49
VPS28Q9UK41 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC18.11■□□□□ 0.49
VPS28Q9UK41 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
VPS28Q9UK41 AL121912.1-201ENST00000603683 238 ntBASIC18.11■□□□□ 0.49
VPS28Q9UK41 AP001269.4-201ENST00000609611 512 ntBASIC18.11■□□□□ 0.49
VPS28Q9UK41 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC18.11■□□□□ 0.49
VPS28Q9UK41 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
VPS28Q9UK41 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
VPS28Q9UK41 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
VPS28Q9UK41 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
VPS28Q9UK41 GNAS-203ENST00000306120 1878 ntBASIC18.11■□□□□ 0.49
VPS28Q9UK41 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
VPS28Q9UK41 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
VPS28Q9UK41 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
VPS28Q9UK41 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
VPS28Q9UK41 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC18.1■□□□□ 0.49
VPS28Q9UK41 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
VPS28Q9UK41 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC18.1■□□□□ 0.49
VPS28Q9UK41 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
VPS28Q9UK41 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
VPS28Q9UK41 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
VPS28Q9UK41 SIRPAP1-201ENST00000448467 1770 ntBASIC18.1■□□□□ 0.49
VPS28Q9UK41 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
VPS28Q9UK41 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC18.1■□□□□ 0.49
VPS28Q9UK41 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
VPS28Q9UK41 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
VPS28Q9UK41 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
VPS28Q9UK41 DDX43P3-201ENST00000441064 443 ntBASIC18.1■□□□□ 0.49
VPS28Q9UK41 ABCD1P5-201ENST00000445663 754 ntBASIC18.1■□□□□ 0.49
VPS28Q9UK41 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC18.1■□□□□ 0.49
VPS28Q9UK41 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC18.1■□□□□ 0.49
VPS28Q9UK41 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
VPS28Q9UK41 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC18.1■□□□□ 0.49
VPS28Q9UK41 AC008608.2-201ENST00000606089 416 ntBASIC18.1■□□□□ 0.49
VPS28Q9UK41 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC18.1■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms