Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 AC023824.1-201ENST00000562945 2975 ntBASIC15.6■□□□□ 0.09
MMP28Q9H239 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC15.6■□□□□ 0.09
MMP28Q9H239 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
MMP28Q9H239 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
MMP28Q9H239 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
MMP28Q9H239 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
MMP28Q9H239 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC15.6■□□□□ 0.09
MMP28Q9H239 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC15.6■□□□□ 0.09
MMP28Q9H239 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
MMP28Q9H239 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC15.6■□□□□ 0.09
MMP28Q9H239 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC15.6■□□□□ 0.09
MMP28Q9H239 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC15.6■□□□□ 0.09
MMP28Q9H239 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC15.6■□□□□ 0.09
MMP28Q9H239 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC15.6■□□□□ 0.09
MMP28Q9H239 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
MMP28Q9H239 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
MMP28Q9H239 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
MMP28Q9H239 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
MMP28Q9H239 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
MMP28Q9H239 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC15.59■□□□□ 0.09
MMP28Q9H239 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC15.59■□□□□ 0.09
MMP28Q9H239 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC15.59■□□□□ 0.09
MMP28Q9H239 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC15.59■□□□□ 0.09
MMP28Q9H239 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC15.59■□□□□ 0.09
MMP28Q9H239 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
MMP28Q9H239 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC15.59■□□□□ 0.09
MMP28Q9H239 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC15.59■□□□□ 0.09
MMP28Q9H239 AC007950.2-201ENST00000615045 2347 ntBASIC15.59■□□□□ 0.09
MMP28Q9H239 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
MMP28Q9H239 AC004951.3-201ENST00000418645 1148 ntBASIC15.59■□□□□ 0.09
MMP28Q9H239 DERL1-203ENST00000419562 918 ntTSL 2 BASIC15.59■□□□□ 0.09
MMP28Q9H239 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC15.59■□□□□ 0.09
MMP28Q9H239 RPS20-210ENST00000523936 899 ntTSL 2 BASIC15.59■□□□□ 0.09
MMP28Q9H239 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC15.59■□□□□ 0.09
MMP28Q9H239 BX088651.1-201ENST00000540551 451 ntBASIC15.59■□□□□ 0.09
MMP28Q9H239 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC15.59■□□□□ 0.09
MMP28Q9H239 LINC01023-201ENST00000606054 436 ntBASIC15.59■□□□□ 0.09
MMP28Q9H239 AC113410.3-201ENST00000623366 203 ntBASIC15.59■□□□□ 0.09
MMP28Q9H239 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC15.59■□□□□ 0.09
MMP28Q9H239 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC15.59■□□□□ 0.09
MMP28Q9H239 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
MMP28Q9H239 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
MMP28Q9H239 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
MMP28Q9H239 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC15.59■□□□□ 0.09
MMP28Q9H239 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC15.59■□□□□ 0.09
MMP28Q9H239 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
MMP28Q9H239 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
MMP28Q9H239 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
MMP28Q9H239 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
MMP28Q9H239 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC15.59■□□□□ 0.09
MMP28Q9H239 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC15.59■□□□□ 0.09
MMP28Q9H239 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC15.59■□□□□ 0.09
MMP28Q9H239 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
MMP28Q9H239 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
MMP28Q9H239 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC15.59■□□□□ 0.09
MMP28Q9H239 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
MMP28Q9H239 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC15.58■□□□□ 0.09
MMP28Q9H239 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
MMP28Q9H239 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC15.58■□□□□ 0.09
MMP28Q9H239 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
MMP28Q9H239 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
MMP28Q9H239 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC15.58■□□□□ 0.09
MMP28Q9H239 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
MMP28Q9H239 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC15.58■□□□□ 0.08
MMP28Q9H239 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC15.58■□□□□ 0.08
MMP28Q9H239 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC15.58■□□□□ 0.08
MMP28Q9H239 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
MMP28Q9H239 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
MMP28Q9H239 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
MMP28Q9H239 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
MMP28Q9H239 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
MMP28Q9H239 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
MMP28Q9H239 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC15.58■□□□□ 0.08
MMP28Q9H239 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
MMP28Q9H239 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
MMP28Q9H239 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC15.58■□□□□ 0.08
MMP28Q9H239 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC15.58■□□□□ 0.08
MMP28Q9H239 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC15.58■□□□□ 0.08
MMP28Q9H239 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC15.58■□□□□ 0.08
MMP28Q9H239 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC15.58■□□□□ 0.08
MMP28Q9H239 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC15.58■□□□□ 0.08
MMP28Q9H239 GRAP-204ENST00000573099 846 ntTSL 3 BASIC15.58■□□□□ 0.08
MMP28Q9H239 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC15.58■□□□□ 0.08
MMP28Q9H239 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC15.58■□□□□ 0.08
MMP28Q9H239 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC15.58■□□□□ 0.08
MMP28Q9H239 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
MMP28Q9H239 AC011298.2-201ENST00000617989 482 ntBASIC15.58■□□□□ 0.08
MMP28Q9H239 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC15.58■□□□□ 0.08
MMP28Q9H239 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.08
MMP28Q9H239 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC15.58■□□□□ 0.08
MMP28Q9H239 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
MMP28Q9H239 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC15.58■□□□□ 0.08
MMP28Q9H239 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
MMP28Q9H239 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
MMP28Q9H239 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC15.58■□□□□ 0.08
MMP28Q9H239 KRT8P32-201ENST00000512863 1461 ntBASIC15.58■□□□□ 0.08
MMP28Q9H239 FSCN1P1-201ENST00000568912 1481 ntBASIC15.58■□□□□ 0.08
MMP28Q9H239 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC15.58■□□□□ 0.08
MMP28Q9H239 GMCL1P1-201ENST00000463439 1581 ntBASIC15.58■□□□□ 0.08
MMP28Q9H239 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC15.57■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 49.7 ms