Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC17.5■□□□□ 0.39
VPS35Q96QK1 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC17.5■□□□□ 0.39
VPS35Q96QK1 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC17.5■□□□□ 0.39
VPS35Q96QK1 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC17.5■□□□□ 0.39
VPS35Q96QK1 IFNL4P1-201ENST00000607083 540 ntBASIC17.5■□□□□ 0.39
VPS35Q96QK1 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
VPS35Q96QK1 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
VPS35Q96QK1 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
VPS35Q96QK1 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC17.5■□□□□ 0.39
VPS35Q96QK1 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
VPS35Q96QK1 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
VPS35Q96QK1 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC17.5■□□□□ 0.39
VPS35Q96QK1 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
VPS35Q96QK1 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC17.5■□□□□ 0.39
VPS35Q96QK1 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC17.5■□□□□ 0.39
VPS35Q96QK1 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
VPS35Q96QK1 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC17.5■□□□□ 0.39
VPS35Q96QK1 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC17.5■□□□□ 0.39
VPS35Q96QK1 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
VPS35Q96QK1 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
VPS35Q96QK1 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
VPS35Q96QK1 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC17.49■□□□□ 0.39
VPS35Q96QK1 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC17.49■□□□□ 0.39
VPS35Q96QK1 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
VPS35Q96QK1 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
VPS35Q96QK1 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VPS35Q96QK1 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VPS35Q96QK1 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC17.49■□□□□ 0.39
VPS35Q96QK1 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC17.49■□□□□ 0.39
VPS35Q96QK1 LSM5-204ENST00000409909 740 ntTSL 2 BASIC17.49■□□□□ 0.39
VPS35Q96QK1 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC17.49■□□□□ 0.39
VPS35Q96QK1 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC17.49■□□□□ 0.39
VPS35Q96QK1 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC17.49■□□□□ 0.39
VPS35Q96QK1 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
VPS35Q96QK1 AC019129.2-201ENST00000609837 1235 ntBASIC17.49■□□□□ 0.39
VPS35Q96QK1 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
VPS35Q96QK1 AD001527.2-201ENST00000622994 785 ntBASIC17.49■□□□□ 0.39
VPS35Q96QK1 LINC01451-201ENST00000623792 534 ntBASIC17.49■□□□□ 0.39
VPS35Q96QK1 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC17.49■□□□□ 0.39
VPS35Q96QK1 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
VPS35Q96QK1 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
VPS35Q96QK1 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VPS35Q96QK1 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
VPS35Q96QK1 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
VPS35Q96QK1 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC17.49■□□□□ 0.39
VPS35Q96QK1 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC17.49■□□□□ 0.39
VPS35Q96QK1 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VPS35Q96QK1 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
VPS35Q96QK1 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
VPS35Q96QK1 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VPS35Q96QK1 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VPS35Q96QK1 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VPS35Q96QK1 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC17.48■□□□□ 0.39
VPS35Q96QK1 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
VPS35Q96QK1 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC17.48■□□□□ 0.39
VPS35Q96QK1 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC17.48■□□□□ 0.39
VPS35Q96QK1 AC012317.2-201ENST00000623305 2251 ntBASIC17.48■□□□□ 0.39
VPS35Q96QK1 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VPS35Q96QK1 DFFB-203ENST00000341385 572 ntTSL 5 BASIC17.48■□□□□ 0.39
VPS35Q96QK1 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VPS35Q96QK1 FUOM-202ENST00000368551 628 ntTSL 3 BASIC17.48■□□□□ 0.39
VPS35Q96QK1 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VPS35Q96QK1 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VPS35Q96QK1 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC17.48■□□□□ 0.39
VPS35Q96QK1 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC17.48■□□□□ 0.39
VPS35Q96QK1 SRP19-202ENST00000445150 833 ntTSL 2 BASIC17.48■□□□□ 0.39
VPS35Q96QK1 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC17.48■□□□□ 0.39
VPS35Q96QK1 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC17.48■□□□□ 0.39
VPS35Q96QK1 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC17.48■□□□□ 0.39
VPS35Q96QK1 REXO1L6P-202ENST00000619970 1078 ntBASIC17.48■□□□□ 0.39
VPS35Q96QK1 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
VPS35Q96QK1 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VPS35Q96QK1 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC17.48■□□□□ 0.39
VPS35Q96QK1 REXO1L11P-201ENST00000620964 1927 ntBASIC17.48■□□□□ 0.39
VPS35Q96QK1 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
VPS35Q96QK1 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC17.48■□□□□ 0.39
VPS35Q96QK1 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
VPS35Q96QK1 AL353593.2-201ENST00000602529 1483 ntBASIC17.48■□□□□ 0.39
VPS35Q96QK1 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VPS35Q96QK1 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
VPS35Q96QK1 AL049757.1-201ENST00000616842 1596 ntBASIC17.48■□□□□ 0.39
VPS35Q96QK1 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
VPS35Q96QK1 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
VPS35Q96QK1 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS35Q96QK1 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
VPS35Q96QK1 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS35Q96QK1 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS35Q96QK1 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS35Q96QK1 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
VPS35Q96QK1 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
VPS35Q96QK1 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC17.47■□□□□ 0.39
VPS35Q96QK1 ABCD1P5-201ENST00000445663 754 ntBASIC17.47■□□□□ 0.39
VPS35Q96QK1 RBSN-204ENST00000449050 903 ntTSL 2 BASIC17.47■□□□□ 0.39
VPS35Q96QK1 AC132008.2-207ENST00000454517 770 ntBASIC17.47■□□□□ 0.39
VPS35Q96QK1 UNC93B7-201ENST00000509439 705 ntBASIC17.47■□□□□ 0.39
VPS35Q96QK1 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC17.47■□□□□ 0.39
VPS35Q96QK1 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
VPS35Q96QK1 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC17.47■□□□□ 0.39
VPS35Q96QK1 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC17.47■□□□□ 0.39
VPS35Q96QK1 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms