Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC16.37■□□□□ 0.21
ZNF540Q8NDQ6 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC16.37■□□□□ 0.21
ZNF540Q8NDQ6 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC16.37■□□□□ 0.21
ZNF540Q8NDQ6 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
ZNF540Q8NDQ6 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
ZNF540Q8NDQ6 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC16.36■□□□□ 0.21
ZNF540Q8NDQ6 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC16.36■□□□□ 0.21
ZNF540Q8NDQ6 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
ZNF540Q8NDQ6 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
ZNF540Q8NDQ6 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
ZNF540Q8NDQ6 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
ZNF540Q8NDQ6 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC16.36■□□□□ 0.21
ZNF540Q8NDQ6 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
ZNF540Q8NDQ6 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
ZNF540Q8NDQ6 AC005521.1-201ENST00000393351 872 ntBASIC16.36■□□□□ 0.21
ZNF540Q8NDQ6 AL390955.1-201ENST00000428694 934 ntBASIC16.36■□□□□ 0.21
ZNF540Q8NDQ6 AC004980.1-204ENST00000429707 299 ntBASIC16.36■□□□□ 0.21
ZNF540Q8NDQ6 ATP5G1P1-201ENST00000448724 379 ntBASIC16.36■□□□□ 0.21
ZNF540Q8NDQ6 TMA16-209ENST00000513272 803 ntTSL 2 BASIC16.36■□□□□ 0.21
ZNF540Q8NDQ6 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
ZNF540Q8NDQ6 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC16.36■□□□□ 0.21
ZNF540Q8NDQ6 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC16.36■□□□□ 0.21
ZNF540Q8NDQ6 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC16.36■□□□□ 0.21
ZNF540Q8NDQ6 AC010947.1-201ENST00000623454 693 ntBASIC16.36■□□□□ 0.21
ZNF540Q8NDQ6 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC16.36■□□□□ 0.21
ZNF540Q8NDQ6 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
ZNF540Q8NDQ6 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
ZNF540Q8NDQ6 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC16.36■□□□□ 0.21
ZNF540Q8NDQ6 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
ZNF540Q8NDQ6 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC16.36■□□□□ 0.21
ZNF540Q8NDQ6 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
ZNF540Q8NDQ6 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC16.36■□□□□ 0.21
ZNF540Q8NDQ6 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
ZNF540Q8NDQ6 AL162727.3-201ENST00000635661 2787 ntBASIC16.36■□□□□ 0.21
ZNF540Q8NDQ6 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
ZNF540Q8NDQ6 KRT8P9-201ENST00000558927 1449 ntBASIC16.36■□□□□ 0.21
ZNF540Q8NDQ6 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
ZNF540Q8NDQ6 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
ZNF540Q8NDQ6 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC16.35■□□□□ 0.21
ZNF540Q8NDQ6 UROS-202ENST00000368778 1556 ntTSL 2 BASIC16.35■□□□□ 0.21
ZNF540Q8NDQ6 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
ZNF540Q8NDQ6 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC16.35■□□□□ 0.21
ZNF540Q8NDQ6 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
ZNF540Q8NDQ6 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC16.35■□□□□ 0.21
ZNF540Q8NDQ6 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
ZNF540Q8NDQ6 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
ZNF540Q8NDQ6 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
ZNF540Q8NDQ6 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
ZNF540Q8NDQ6 DOC2GP-204ENST00000639052 2548 ntBASIC16.35■□□□□ 0.21
ZNF540Q8NDQ6 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
ZNF540Q8NDQ6 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
ZNF540Q8NDQ6 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
ZNF540Q8NDQ6 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
ZNF540Q8NDQ6 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
ZNF540Q8NDQ6 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC16.35■□□□□ 0.21
ZNF540Q8NDQ6 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC16.35■□□□□ 0.21
ZNF540Q8NDQ6 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC16.35■□□□□ 0.21
ZNF540Q8NDQ6 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC16.35■□□□□ 0.21
ZNF540Q8NDQ6 AC011270.2-201ENST00000624293 2550 ntBASIC16.35■□□□□ 0.21
ZNF540Q8NDQ6 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
ZNF540Q8NDQ6 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
ZNF540Q8NDQ6 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
ZNF540Q8NDQ6 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
ZNF540Q8NDQ6 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
ZNF540Q8NDQ6 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
ZNF540Q8NDQ6 CYP2D8P-201ENST00000433633 1490 ntBASIC16.35■□□□□ 0.21
ZNF540Q8NDQ6 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC16.35■□□□□ 0.21
ZNF540Q8NDQ6 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
ZNF540Q8NDQ6 AL163051.1-201ENST00000569214 1512 ntBASIC16.35■□□□□ 0.21
ZNF540Q8NDQ6 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC16.34■□□□□ 0.21
ZNF540Q8NDQ6 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
ZNF540Q8NDQ6 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
ZNF540Q8NDQ6 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
ZNF540Q8NDQ6 NFIC-211ENST00000641145 8399 ntBASIC16.34■□□□□ 0.21
ZNF540Q8NDQ6 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
ZNF540Q8NDQ6 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
ZNF540Q8NDQ6 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC16.34■□□□□ 0.21
ZNF540Q8NDQ6 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
ZNF540Q8NDQ6 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
ZNF540Q8NDQ6 TSPY14P-201ENST00000303979 915 ntBASIC16.34■□□□□ 0.21
ZNF540Q8NDQ6 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
ZNF540Q8NDQ6 MIR149-201ENST00000384879 89 ntBASIC16.34■□□□□ 0.21
ZNF540Q8NDQ6 CRYGFP-201ENST00000418459 633 ntBASIC16.34■□□□□ 0.21
ZNF540Q8NDQ6 ELP6-205ENST00000439305 880 ntTSL 2 BASIC16.34■□□□□ 0.21
ZNF540Q8NDQ6 SLC25A3P1-201ENST00000443844 931 ntBASIC16.34■□□□□ 0.21
ZNF540Q8NDQ6 AC091390.4-202ENST00000476426 537 ntBASIC16.34■□□□□ 0.21
ZNF540Q8NDQ6 DUT-205ENST00000558813 769 ntTSL 2 BASIC16.34■□□□□ 0.21
ZNF540Q8NDQ6 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC16.34■□□□□ 0.21
ZNF540Q8NDQ6 AC130371.2-201ENST00000619443 611 ntBASIC16.34■□□□□ 0.21
ZNF540Q8NDQ6 ABBA01031674.1-201ENST00000635145 728 ntBASIC16.34■□□□□ 0.21
ZNF540Q8NDQ6 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
ZNF540Q8NDQ6 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC16.34■□□□□ 0.21
ZNF540Q8NDQ6 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
ZNF540Q8NDQ6 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
ZNF540Q8NDQ6 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
ZNF540Q8NDQ6 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
ZNF540Q8NDQ6 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC16.34■□□□□ 0.21
ZNF540Q8NDQ6 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
ZNF540Q8NDQ6 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
ZNF540Q8NDQ6 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms