Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC16.85■□□□□ 0.29
MSX2P35548 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC16.85■□□□□ 0.29
MSX2P35548 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
MSX2P35548 AL596257.1-201ENST00000641463 2694 ntBASIC16.84■□□□□ 0.29
MSX2P35548 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
MSX2P35548 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
MSX2P35548 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
MSX2P35548 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC16.84■□□□□ 0.29
MSX2P35548 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC16.84■□□□□ 0.29
MSX2P35548 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
MSX2P35548 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC16.84■□□□□ 0.29
MSX2P35548 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
MSX2P35548 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
MSX2P35548 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
MSX2P35548 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC16.84■□□□□ 0.29
MSX2P35548 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
MSX2P35548 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
MSX2P35548 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
MSX2P35548 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
MSX2P35548 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
MSX2P35548 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC16.84■□□□□ 0.29
MSX2P35548 SAPCD2P4-201ENST00000424595 1171 ntBASIC16.84■□□□□ 0.29
MSX2P35548 CA15P1-201ENST00000481698 905 ntBASIC16.84■□□□□ 0.29
MSX2P35548 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC16.84■□□□□ 0.29
MSX2P35548 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
MSX2P35548 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC16.84■□□□□ 0.29
MSX2P35548 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
MSX2P35548 AC006058.3-201ENST00000606217 1069 ntBASIC16.84■□□□□ 0.29
MSX2P35548 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
MSX2P35548 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
MSX2P35548 LINC00167-201ENST00000530583 1419 ntBASIC16.84■□□□□ 0.29
MSX2P35548 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
MSX2P35548 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
MSX2P35548 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
MSX2P35548 MYB-201ENST00000316528 3571 ntTSL 5 BASIC16.84■□□□□ 0.29
MSX2P35548 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC16.84■□□□□ 0.29
MSX2P35548 MYB-241ENST00000616088 3573 ntTSL 5 BASIC16.84■□□□□ 0.29
MSX2P35548 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC16.84■□□□□ 0.29
MSX2P35548 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
MSX2P35548 AL391005.1-201ENST00000623953 2435 ntBASIC16.84■□□□□ 0.29
MSX2P35548 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
MSX2P35548 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
MSX2P35548 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
MSX2P35548 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.29
MSX2P35548 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
MSX2P35548 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
MSX2P35548 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
MSX2P35548 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
MSX2P35548 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC16.83■□□□□ 0.28
MSX2P35548 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
MSX2P35548 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
MSX2P35548 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
MSX2P35548 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC16.83■□□□□ 0.28
MSX2P35548 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
MSX2P35548 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC16.83■□□□□ 0.28
MSX2P35548 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC16.83■□□□□ 0.28
MSX2P35548 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
MSX2P35548 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC16.83■□□□□ 0.28
MSX2P35548 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC16.83■□□□□ 0.28
MSX2P35548 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC16.83■□□□□ 0.28
MSX2P35548 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC16.83■□□□□ 0.28
MSX2P35548 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
MSX2P35548 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC16.83■□□□□ 0.28
MSX2P35548 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC16.83■□□□□ 0.28
MSX2P35548 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
MSX2P35548 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
MSX2P35548 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC16.83■□□□□ 0.28
MSX2P35548 AC116353.5-201ENST00000638148 1699 ntBASIC16.83■□□□□ 0.28
MSX2P35548 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC16.83■□□□□ 0.28
MSX2P35548 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC16.83■□□□□ 0.28
MSX2P35548 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
MSX2P35548 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
MSX2P35548 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
MSX2P35548 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
MSX2P35548 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
MSX2P35548 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC16.82■□□□□ 0.28
MSX2P35548 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
MSX2P35548 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC16.82■□□□□ 0.28
MSX2P35548 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
MSX2P35548 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
MSX2P35548 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
MSX2P35548 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC16.82■□□□□ 0.28
MSX2P35548 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
MSX2P35548 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
MSX2P35548 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
MSX2P35548 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
MSX2P35548 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC16.82■□□□□ 0.28
MSX2P35548 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC16.82■□□□□ 0.28
MSX2P35548 CRYGFP-201ENST00000418459 633 ntBASIC16.82■□□□□ 0.28
MSX2P35548 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
MSX2P35548 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC16.82■□□□□ 0.28
MSX2P35548 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
MSX2P35548 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC16.82■□□□□ 0.28
MSX2P35548 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
MSX2P35548 AC009065.1-201ENST00000564055 1225 ntBASIC16.82■□□□□ 0.28
MSX2P35548 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC16.82■□□□□ 0.28
MSX2P35548 CYGB-204ENST00000589342 815 ntTSL 3 BASIC16.82■□□□□ 0.28
MSX2P35548 AC112497.1-201ENST00000624824 639 ntBASIC16.82■□□□□ 0.28
MSX2P35548 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC16.82■□□□□ 0.28
MSX2P35548 PCDHB17P-201ENST00000539533 2393 ntBASIC16.82■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 48.2 ms