Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC17.74■□□□□ 0.43
VIMP08670 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC17.74■□□□□ 0.43
VIMP08670 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC17.74■□□□□ 0.43
VIMP08670 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
VIMP08670 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC17.74■□□□□ 0.43
VIMP08670 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC17.74■□□□□ 0.43
VIMP08670 AC133041.1-202ENST00000642053 222 ntBASIC17.74■□□□□ 0.43
VIMP08670 AC063926.3-201ENST00000624734 5658 ntBASIC17.74■□□□□ 0.43
VIMP08670 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC17.74■□□□□ 0.43
VIMP08670 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
VIMP08670 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
VIMP08670 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC17.74■□□□□ 0.43
VIMP08670 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC17.74■□□□□ 0.43
VIMP08670 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
VIMP08670 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
VIMP08670 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
VIMP08670 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
VIMP08670 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
VIMP08670 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC17.74■□□□□ 0.43
VIMP08670 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
VIMP08670 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
VIMP08670 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
VIMP08670 FRMD6-AS1-201ENST00000617151 2229 ntBASIC17.74■□□□□ 0.43
VIMP08670 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
VIMP08670 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC17.74■□□□□ 0.43
VIMP08670 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
VIMP08670 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
VIMP08670 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC17.73■□□□□ 0.43
VIMP08670 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VIMP08670 AL024508.2-201ENST00000607749 1894 ntBASIC17.73■□□□□ 0.43
VIMP08670 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
VIMP08670 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC17.73■□□□□ 0.43
VIMP08670 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VIMP08670 AC103702.1-201ENST00000548801 2630 ntBASIC17.73■□□□□ 0.43
VIMP08670 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
VIMP08670 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC17.73■□□□□ 0.43
VIMP08670 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
VIMP08670 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VIMP08670 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
VIMP08670 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VIMP08670 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC17.73■□□□□ 0.43
VIMP08670 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
VIMP08670 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
VIMP08670 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VIMP08670 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC17.73■□□□□ 0.43
VIMP08670 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
VIMP08670 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
VIMP08670 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC17.73■□□□□ 0.43
VIMP08670 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC17.73■□□□□ 0.43
VIMP08670 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
VIMP08670 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
VIMP08670 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VIMP08670 AC132938.6-201ENST00000623828 1655 ntBASIC17.73■□□□□ 0.43
VIMP08670 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC17.73■□□□□ 0.43
VIMP08670 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC17.73■□□□□ 0.43
VIMP08670 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VIMP08670 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
VIMP08670 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
VIMP08670 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VIMP08670 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC17.73■□□□□ 0.43
VIMP08670 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
VIMP08670 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
VIMP08670 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC17.73■□□□□ 0.43
VIMP08670 AC022898.2-201ENST00000616822 1312 ntBASIC17.72■□□□□ 0.43
VIMP08670 ASL-204ENST00000395331 1538 ntTSL 5 BASIC17.72■□□□□ 0.43
VIMP08670 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
VIMP08670 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC17.72■□□□□ 0.43
VIMP08670 REXO1L11P-201ENST00000620964 1927 ntBASIC17.72■□□□□ 0.43
VIMP08670 AC026691.1-201ENST00000602502 2017 ntBASIC17.72■□□□□ 0.43
VIMP08670 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
VIMP08670 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
VIMP08670 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
VIMP08670 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC17.72■□□□□ 0.43
VIMP08670 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
VIMP08670 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
VIMP08670 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
VIMP08670 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
VIMP08670 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC17.72■□□□□ 0.43
VIMP08670 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC17.72■□□□□ 0.43
VIMP08670 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
VIMP08670 BUB3-202ENST00000368859 667 ntTSL 3 BASIC17.72■□□□□ 0.43
VIMP08670 NIFKP9-201ENST00000419265 221 ntBASIC17.72■□□□□ 0.43
VIMP08670 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC17.72■□□□□ 0.43
VIMP08670 PPP1R14BP5-201ENST00000440334 435 ntBASIC17.72■□□□□ 0.43
VIMP08670 AC008040.2-201ENST00000461049 708 ntBASIC17.72■□□□□ 0.43
VIMP08670 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC17.72■□□□□ 0.43
VIMP08670 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC17.72■□□□□ 0.43
VIMP08670 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
VIMP08670 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC17.72■□□□□ 0.43
VIMP08670 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC17.72■□□□□ 0.43
VIMP08670 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
VIMP08670 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC17.72■□□□□ 0.43
VIMP08670 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
VIMP08670 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
VIMP08670 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC17.72■□□□□ 0.43
VIMP08670 AC132872.4-202ENST00000622924 2756 ntBASIC17.72■□□□□ 0.43
VIMP08670 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC17.72■□□□□ 0.43
VIMP08670 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
VIMP08670 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
VIMP08670 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms