Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC17.17■□□□□ 0.34
TNFP01375 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC17.17■□□□□ 0.34
TNFP01375 AC140113.2-201ENST00000604370 208 ntBASIC17.17■□□□□ 0.34
TNFP01375 AC009336.1-201ENST00000608941 1553 ntBASIC17.17■□□□□ 0.34
TNFP01375 GPALPP1-207ENST00000611650 899 ntBASIC17.17■□□□□ 0.34
TNFP01375 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
TNFP01375 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
TNFP01375 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TNFP01375 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
TNFP01375 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
TNFP01375 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC17.17■□□□□ 0.34
TNFP01375 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC17.17■□□□□ 0.34
TNFP01375 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
TNFP01375 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
TNFP01375 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
TNFP01375 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC17.17■□□□□ 0.34
TNFP01375 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
TNFP01375 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
TNFP01375 GID4-202ENST00000376345 1391 ntTSL 3 BASIC17.16■□□□□ 0.34
TNFP01375 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC17.16■□□□□ 0.34
TNFP01375 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
TNFP01375 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC17.16■□□□□ 0.34
TNFP01375 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
TNFP01375 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TNFP01375 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TNFP01375 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TNFP01375 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
TNFP01375 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TNFP01375 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC17.16■□□□□ 0.34
TNFP01375 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
TNFP01375 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC17.16■□□□□ 0.34
TNFP01375 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC17.16■□□□□ 0.34
TNFP01375 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC17.16■□□□□ 0.34
TNFP01375 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
TNFP01375 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC17.16■□□□□ 0.34
TNFP01375 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TNFP01375 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC17.16■□□□□ 0.34
TNFP01375 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC17.16■□□□□ 0.34
TNFP01375 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TNFP01375 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TNFP01375 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TNFP01375 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
TNFP01375 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC17.15■□□□□ 0.34
TNFP01375 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TNFP01375 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
TNFP01375 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
TNFP01375 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
TNFP01375 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
TNFP01375 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
TNFP01375 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TNFP01375 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC17.15■□□□□ 0.34
TNFP01375 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
TNFP01375 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
TNFP01375 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC17.15■□□□□ 0.34
TNFP01375 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC17.15■□□□□ 0.34
TNFP01375 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
TNFP01375 KRT18P13-201ENST00000400056 1290 ntBASIC17.15■□□□□ 0.34
TNFP01375 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
TNFP01375 AC005104.2-201ENST00000427818 678 ntBASIC17.15■□□□□ 0.34
TNFP01375 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC17.15■□□□□ 0.34
TNFP01375 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC17.15■□□□□ 0.34
TNFP01375 AC009947.1-201ENST00000444350 727 ntBASIC17.15■□□□□ 0.34
TNFP01375 KRT18P3-201ENST00000451602 1288 ntBASIC17.15■□□□□ 0.34
TNFP01375 ARTN-206ENST00000472435 402 ntTSL 3 BASIC17.15■□□□□ 0.34
TNFP01375 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TNFP01375 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC17.15■□□□□ 0.34
TNFP01375 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
TNFP01375 AC092865.5-201ENST00000545435 363 ntBASIC17.15■□□□□ 0.34
TNFP01375 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
TNFP01375 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC17.15■□□□□ 0.34
TNFP01375 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC17.15■□□□□ 0.34
TNFP01375 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC17.15■□□□□ 0.34
TNFP01375 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TNFP01375 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
TNFP01375 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TNFP01375 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC17.15■□□□□ 0.34
TNFP01375 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC17.15■□□□□ 0.34
TNFP01375 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TNFP01375 BICD1-207ENST00000551848 1962 ntBASIC17.15■□□□□ 0.34
TNFP01375 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
TNFP01375 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
TNFP01375 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TNFP01375 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC17.14■□□□□ 0.34
TNFP01375 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
TNFP01375 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
TNFP01375 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
TNFP01375 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TNFP01375 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
TNFP01375 HLA-DQB1-201ENST00000374943 1656 ntBASIC17.14■□□□□ 0.33
TNFP01375 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TNFP01375 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
TNFP01375 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
TNFP01375 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TNFP01375 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC17.14■□□□□ 0.33
TNFP01375 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
TNFP01375 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TNFP01375 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TNFP01375 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TNFP01375 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
TNFP01375 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 56 ms