Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC17.19■□□□□ 0.34
SDC3O75056 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
SDC3O75056 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SDC3O75056 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC17.19■□□□□ 0.34
SDC3O75056 GGCT-205ENST00000409436 954 ntTSL 3 BASIC17.19■□□□□ 0.34
SDC3O75056 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
SDC3O75056 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
SDC3O75056 AC018845.2-201ENST00000568326 409 ntBASIC17.19■□□□□ 0.34
SDC3O75056 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
SDC3O75056 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC17.19■□□□□ 0.34
SDC3O75056 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC17.19■□□□□ 0.34
SDC3O75056 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC17.19■□□□□ 0.34
SDC3O75056 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
SDC3O75056 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SDC3O75056 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SDC3O75056 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC17.19■□□□□ 0.34
SDC3O75056 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
SDC3O75056 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC17.19■□□□□ 0.34
SDC3O75056 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC17.18■□□□□ 0.34
SDC3O75056 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC17.18■□□□□ 0.34
SDC3O75056 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
SDC3O75056 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SDC3O75056 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
SDC3O75056 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC17.18■□□□□ 0.34
SDC3O75056 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
SDC3O75056 PC-208ENST00000529047 1607 ntTSL 3 BASIC17.18■□□□□ 0.34
SDC3O75056 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
SDC3O75056 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC17.18■□□□□ 0.34
SDC3O75056 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
SDC3O75056 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC17.18■□□□□ 0.34
SDC3O75056 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC17.18■□□□□ 0.34
SDC3O75056 CRYGEP-201ENST00000412192 528 ntBASIC17.18■□□□□ 0.34
SDC3O75056 AC108073.2-201ENST00000464002 357 ntBASIC17.18■□□□□ 0.34
SDC3O75056 S100A2-206ENST00000497140 697 ntTSL 2 BASIC17.18■□□□□ 0.34
SDC3O75056 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC17.18■□□□□ 0.34
SDC3O75056 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC17.18■□□□□ 0.34
SDC3O75056 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC17.18■□□□□ 0.34
SDC3O75056 TCAP-202ENST00000578283 583 ntTSL 5 BASIC17.18■□□□□ 0.34
SDC3O75056 MTDHP5-201ENST00000598980 586 ntBASIC17.18■□□□□ 0.34
SDC3O75056 AC019129.2-201ENST00000609837 1235 ntBASIC17.18■□□□□ 0.34
SDC3O75056 AC079781.4-201ENST00000641908 219 ntBASIC17.18■□□□□ 0.34
SDC3O75056 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SDC3O75056 NCF1C-201ENST00000438382 1427 ntBASIC17.18■□□□□ 0.34
SDC3O75056 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SDC3O75056 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
SDC3O75056 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SDC3O75056 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SDC3O75056 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC17.18■□□□□ 0.34
SDC3O75056 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC17.18■□□□□ 0.34
SDC3O75056 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC17.18■□□□□ 0.34
SDC3O75056 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC17.18■□□□□ 0.34
SDC3O75056 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
SDC3O75056 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
SDC3O75056 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC17.17■□□□□ 0.34
SDC3O75056 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
SDC3O75056 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
SDC3O75056 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC17.17■□□□□ 0.34
SDC3O75056 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
SDC3O75056 REXO1L9P-201ENST00000604264 2108 ntBASIC17.17■□□□□ 0.34
SDC3O75056 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
SDC3O75056 AC003669.1-201ENST00000334569 611 ntBASIC17.17■□□□□ 0.34
SDC3O75056 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC17.17■□□□□ 0.34
SDC3O75056 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SDC3O75056 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SDC3O75056 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC17.17■□□□□ 0.34
SDC3O75056 METTL26-205ENST00000397666 726 ntTSL 2 BASIC17.17■□□□□ 0.34
SDC3O75056 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC17.17■□□□□ 0.34
SDC3O75056 COA5-202ENST00000409997 557 ntTSL 4 BASIC17.17■□□□□ 0.34
SDC3O75056 URGCP-206ENST00000446958 365 ntTSL 2 BASIC17.17■□□□□ 0.34
SDC3O75056 DNAJB3-202ENST00000449667 1266 ntBASIC17.17■□□□□ 0.34
SDC3O75056 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC17.17■□□□□ 0.34
SDC3O75056 SIGLEC30P-201ENST00000455569 941 ntBASIC17.17■□□□□ 0.34
SDC3O75056 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC17.17■□□□□ 0.34
SDC3O75056 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC17.17■□□□□ 0.34
SDC3O75056 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC17.17■□□□□ 0.34
SDC3O75056 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC17.17■□□□□ 0.34
SDC3O75056 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
SDC3O75056 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC17.17■□□□□ 0.34
SDC3O75056 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
SDC3O75056 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC17.17■□□□□ 0.34
SDC3O75056 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
SDC3O75056 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
SDC3O75056 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC17.17■□□□□ 0.34
SDC3O75056 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
SDC3O75056 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC17.17■□□□□ 0.34
SDC3O75056 PODN-203ENST00000395871 2744 ntTSL 5 BASIC17.17■□□□□ 0.34
SDC3O75056 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
SDC3O75056 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
SDC3O75056 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SDC3O75056 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC17.16■□□□□ 0.34
SDC3O75056 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC17.16■□□□□ 0.34
SDC3O75056 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
SDC3O75056 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC17.16■□□□□ 0.34
SDC3O75056 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC17.16■□□□□ 0.34
SDC3O75056 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
SDC3O75056 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC17.16■□□□□ 0.34
SDC3O75056 POR-209ENST00000439269 1858 ntTSL 2 BASIC17.16■□□□□ 0.34
SDC3O75056 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
SDC3O75056 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
SDC3O75056 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms