Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC22■■□□□ 1.11
CACNA1FO60840 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC22■■□□□ 1.11
CACNA1FO60840 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
CACNA1FO60840 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC22■■□□□ 1.11
CACNA1FO60840 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC22■■□□□ 1.11
CACNA1FO60840 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC22■■□□□ 1.11
CACNA1FO60840 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
CACNA1FO60840 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC22■■□□□ 1.11
CACNA1FO60840 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC22■■□□□ 1.11
CACNA1FO60840 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC22■■□□□ 1.11
CACNA1FO60840 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC22■■□□□ 1.11
CACNA1FO60840 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
CACNA1FO60840 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC22■■□□□ 1.11
CACNA1FO60840 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC22■■□□□ 1.11
CACNA1FO60840 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC22■■□□□ 1.11
CACNA1FO60840 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC22■■□□□ 1.11
CACNA1FO60840 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
CACNA1FO60840 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
CACNA1FO60840 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC22■■□□□ 1.11
CACNA1FO60840 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC22■■□□□ 1.11
CACNA1FO60840 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC21.99■■□□□ 1.11
CACNA1FO60840 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
CACNA1FO60840 MRPL20P1-201ENST00000400819 433 ntBASIC21.99■■□□□ 1.11
CACNA1FO60840 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC21.99■■□□□ 1.11
CACNA1FO60840 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC21.99■■□□□ 1.11
CACNA1FO60840 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC21.99■■□□□ 1.11
CACNA1FO60840 AC079776.4-201ENST00000511039 504 ntBASIC21.99■■□□□ 1.11
CACNA1FO60840 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC21.99■■□□□ 1.11
CACNA1FO60840 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC21.99■■□□□ 1.11
CACNA1FO60840 FAM215A-202ENST00000632077 792 ntBASIC21.99■■□□□ 1.11
CACNA1FO60840 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC21.99■■□□□ 1.11
CACNA1FO60840 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
CACNA1FO60840 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC21.99■■□□□ 1.11
CACNA1FO60840 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
CACNA1FO60840 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC21.99■■□□□ 1.11
CACNA1FO60840 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC21.99■■□□□ 1.11
CACNA1FO60840 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
CACNA1FO60840 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC21.99■■□□□ 1.11
CACNA1FO60840 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC21.99■■□□□ 1.11
CACNA1FO60840 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
CACNA1FO60840 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC21.99■■□□□ 1.11
CACNA1FO60840 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
CACNA1FO60840 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
CACNA1FO60840 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
CACNA1FO60840 MIR574-201ENST00000385209 96 ntBASIC21.99■■□□□ 1.11
CACNA1FO60840 RPS15P9-201ENST00000494093 319 ntBASIC21.99■■□□□ 1.11
CACNA1FO60840 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC21.99■■□□□ 1.11
CACNA1FO60840 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC21.99■■□□□ 1.11
CACNA1FO60840 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC21.99■■□□□ 1.11
CACNA1FO60840 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC21.99■■□□□ 1.11
CACNA1FO60840 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC21.99■■□□□ 1.11
CACNA1FO60840 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC21.98■■□□□ 1.11
CACNA1FO60840 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC21.98■■□□□ 1.11
CACNA1FO60840 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC21.98■■□□□ 1.11
CACNA1FO60840 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
CACNA1FO60840 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
CACNA1FO60840 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
CACNA1FO60840 LINC00982-205ENST00000420957 435 ntBASIC21.98■■□□□ 1.11
CACNA1FO60840 AC093909.1-201ENST00000504731 1122 ntBASIC21.98■■□□□ 1.11
CACNA1FO60840 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC21.98■■□□□ 1.11
CACNA1FO60840 AC106730.1-201ENST00000566722 1090 ntBASIC21.98■■□□□ 1.11
CACNA1FO60840 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC21.98■■□□□ 1.11
CACNA1FO60840 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
CACNA1FO60840 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
CACNA1FO60840 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
CACNA1FO60840 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC21.98■■□□□ 1.11
CACNA1FO60840 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC21.98■■□□□ 1.11
CACNA1FO60840 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
CACNA1FO60840 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC21.98■■□□□ 1.11
CACNA1FO60840 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC21.98■■□□□ 1.11
CACNA1FO60840 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC21.98■■□□□ 1.11
CACNA1FO60840 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC21.98■■□□□ 1.11
CACNA1FO60840 TERC-201ENST00000602385 541 ntBASIC21.98■■□□□ 1.11
CACNA1FO60840 AC140113.2-201ENST00000604370 208 ntBASIC21.98■■□□□ 1.11
CACNA1FO60840 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC21.97■■□□□ 1.11
CACNA1FO60840 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC21.97■■□□□ 1.11
CACNA1FO60840 LINC00896-202ENST00000609602 2128 ntBASIC21.97■■□□□ 1.11
CACNA1FO60840 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC21.97■■□□□ 1.11
CACNA1FO60840 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC21.97■■□□□ 1.11
CACNA1FO60840 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC21.97■■□□□ 1.11
CACNA1FO60840 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC21.97■■□□□ 1.11
CACNA1FO60840 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
CACNA1FO60840 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC21.97■■□□□ 1.11
CACNA1FO60840 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
CACNA1FO60840 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC21.97■■□□□ 1.11
CACNA1FO60840 CRYGEP-201ENST00000412192 528 ntBASIC21.97■■□□□ 1.11
CACNA1FO60840 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
CACNA1FO60840 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
CACNA1FO60840 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC21.97■■□□□ 1.11
CACNA1FO60840 AC124947.2-201ENST00000547118 1133 ntBASIC21.97■■□□□ 1.11
CACNA1FO60840 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC21.97■■□□□ 1.11
CACNA1FO60840 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC21.97■■□□□ 1.11
CACNA1FO60840 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC21.97■■□□□ 1.11
CACNA1FO60840 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
CACNA1FO60840 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
CACNA1FO60840 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC21.96■■□□□ 1.11
CACNA1FO60840 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC21.96■■□□□ 1.11
CACNA1FO60840 AL590627.1-203ENST00000421194 1026 ntBASIC21.96■■□□□ 1.11
CACNA1FO60840 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC21.96■■□□□ 1.11
CACNA1FO60840 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms