Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
HMGB3O15347 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
HMGB3O15347 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
HMGB3O15347 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
HMGB3O15347 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC14.21□□□□□ -0.13
HMGB3O15347 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
HMGB3O15347 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
HMGB3O15347 FZD5-201ENST00000295417 6708 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
HMGB3O15347 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
HMGB3O15347 TLK1-202ENST00000360843 5726 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
HMGB3O15347 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
HMGB3O15347 OSMR-201ENST00000274276 5539 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
HMGB3O15347 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC14.21□□□□□ -0.13
HMGB3O15347 OSBPL3-201ENST00000313367 6760 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
HMGB3O15347 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
HMGB3O15347 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC14.21□□□□□ -0.13
HMGB3O15347 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC14.21□□□□□ -0.13
HMGB3O15347 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
HMGB3O15347 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC14.21□□□□□ -0.13
HMGB3O15347 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC14.21□□□□□ -0.13
HMGB3O15347 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
HMGB3O15347 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
HMGB3O15347 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC14.21□□□□□ -0.13
HMGB3O15347 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC14.21□□□□□ -0.13
HMGB3O15347 LINC00174-204ENST00000421767 4702 ntTSL 5 BASIC14.21□□□□□ -0.13
HMGB3O15347 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC14.21□□□□□ -0.13
HMGB3O15347 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
HMGB3O15347 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC14.21□□□□□ -0.13
HMGB3O15347 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.14
HMGB3O15347 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC14.21□□□□□ -0.14
HMGB3O15347 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC14.21□□□□□ -0.14
HMGB3O15347 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC14.21□□□□□ -0.14
HMGB3O15347 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
HMGB3O15347 SLC4A5-201ENST00000346834 6233 ntAPPRIS P4 TSL 5 BASIC14.21□□□□□ -0.14
HMGB3O15347 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
HMGB3O15347 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC14.21□□□□□ -0.14
HMGB3O15347 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
HMGB3O15347 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.14
HMGB3O15347 ITGB4-202ENST00000449880 5689 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.14
HMGB3O15347 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
HMGB3O15347 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC14.2□□□□□ -0.14
HMGB3O15347 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
HMGB3O15347 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
HMGB3O15347 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC14.2□□□□□ -0.14
HMGB3O15347 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
HMGB3O15347 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
HMGB3O15347 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC14.2□□□□□ -0.14
HMGB3O15347 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
HMGB3O15347 ASPG-206ENST00000551177 4851 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
HMGB3O15347 MYB-242ENST00000618728 3545 ntTSL 5 BASIC14.2□□□□□ -0.14
HMGB3O15347 KMT2E-202ENST00000311117 6874 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
HMGB3O15347 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC14.2□□□□□ -0.14
HMGB3O15347 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
HMGB3O15347 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
HMGB3O15347 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
HMGB3O15347 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
HMGB3O15347 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
HMGB3O15347 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
HMGB3O15347 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC14.2□□□□□ -0.14
HMGB3O15347 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC14.2□□□□□ -0.14
HMGB3O15347 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
HMGB3O15347 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
HMGB3O15347 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC14.2□□□□□ -0.14
HMGB3O15347 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
HMGB3O15347 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC14.2□□□□□ -0.14
HMGB3O15347 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC14.2□□□□□ -0.14
HMGB3O15347 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC14.2□□□□□ -0.14
HMGB3O15347 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC14.2□□□□□ -0.14
HMGB3O15347 PPP1R14BP2-201ENST00000426284 444 ntBASIC14.2□□□□□ -0.14
HMGB3O15347 AC083906.2-201ENST00000511578 360 ntBASIC14.2□□□□□ -0.14
HMGB3O15347 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC14.2□□□□□ -0.14
HMGB3O15347 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC14.2□□□□□ -0.14
HMGB3O15347 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC14.2□□□□□ -0.14
HMGB3O15347 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
HMGB3O15347 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
HMGB3O15347 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
HMGB3O15347 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
HMGB3O15347 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC14.2□□□□□ -0.14
HMGB3O15347 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
HMGB3O15347 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
HMGB3O15347 KIAA1217-203ENST00000376452 6052 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
HMGB3O15347 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC14.2□□□□□ -0.14
HMGB3O15347 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC14.2□□□□□ -0.14
HMGB3O15347 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
HMGB3O15347 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
HMGB3O15347 KDM5B-202ENST00000367264 6449 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
HMGB3O15347 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC14.2□□□□□ -0.14
HMGB3O15347 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
HMGB3O15347 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
HMGB3O15347 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
HMGB3O15347 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
HMGB3O15347 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
HMGB3O15347 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HMGB3O15347 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
HMGB3O15347 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
HMGB3O15347 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
HMGB3O15347 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
HMGB3O15347 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC14.19□□□□□ -0.14
HMGB3O15347 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
HMGB3O15347 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms