Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 AC141257.4-201ENST00000634557 245 ntBASIC15.02■□□□□ -0
SDCBPO00560 AC136944.6-201ENST00000634818 245 ntBASIC15.02■□□□□ -0
SDCBPO00560 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC15.02■□□□□ -0
SDCBPO00560 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC15.02□□□□□ -0.01
SDCBPO00560 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC15.02□□□□□ -0.01
SDCBPO00560 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC15.02□□□□□ -0.01
SDCBPO00560 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC15.02□□□□□ -0.01
SDCBPO00560 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC15.02□□□□□ -0.01
SDCBPO00560 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
SDCBPO00560 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02□□□□□ -0.01
SDCBPO00560 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
SDCBPO00560 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC15.02□□□□□ -0.01
SDCBPO00560 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
SDCBPO00560 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
SDCBPO00560 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC15.02□□□□□ -0.01
SDCBPO00560 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
SDCBPO00560 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
SDCBPO00560 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC15.02□□□□□ -0.01
SDCBPO00560 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
SDCBPO00560 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
SDCBPO00560 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC15.02□□□□□ -0.01
SDCBPO00560 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
SDCBPO00560 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
SDCBPO00560 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02□□□□□ -0.01
SDCBPO00560 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
SDCBPO00560 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SDCBPO00560 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC15.01□□□□□ -0.01
SDCBPO00560 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
SDCBPO00560 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC15.01□□□□□ -0.01
SDCBPO00560 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
SDCBPO00560 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC15.01□□□□□ -0.01
SDCBPO00560 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SDCBPO00560 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC15.01□□□□□ -0.01
SDCBPO00560 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC15.01□□□□□ -0.01
SDCBPO00560 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
SDCBPO00560 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
SDCBPO00560 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SDCBPO00560 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SDCBPO00560 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
SDCBPO00560 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
SDCBPO00560 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SDCBPO00560 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SDCBPO00560 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC15.01□□□□□ -0.01
SDCBPO00560 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SDCBPO00560 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
SDCBPO00560 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC15.01□□□□□ -0.01
SDCBPO00560 SLC25A3P1-201ENST00000443844 931 ntBASIC15.01□□□□□ -0.01
SDCBPO00560 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SDCBPO00560 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC15.01□□□□□ -0.01
SDCBPO00560 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC15.01□□□□□ -0.01
SDCBPO00560 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
SDCBPO00560 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC15.01□□□□□ -0.01
SDCBPO00560 REEP1-209ENST00000541910 969 ntTSL 2 BASIC15.01□□□□□ -0.01
SDCBPO00560 DUT-205ENST00000558813 769 ntTSL 2 BASIC15.01□□□□□ -0.01
SDCBPO00560 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC15.01□□□□□ -0.01
SDCBPO00560 MIR3917-201ENST00000580971 93 ntBASIC15.01□□□□□ -0.01
SDCBPO00560 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC15.01□□□□□ -0.01
SDCBPO00560 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SDCBPO00560 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SDCBPO00560 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC15.01□□□□□ -0.01
SDCBPO00560 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SDCBPO00560 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SDCBPO00560 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SDCBPO00560 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SDCBPO00560 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
SDCBPO00560 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
SDCBPO00560 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC15.01□□□□□ -0.01
SDCBPO00560 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC15.01□□□□□ -0.01
SDCBPO00560 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC15.01□□□□□ -0.01
SDCBPO00560 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC15.01□□□□□ -0.01
SDCBPO00560 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SDCBPO00560 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SDCBPO00560 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC15□□□□□ -0.01
SDCBPO00560 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
SDCBPO00560 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
SDCBPO00560 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC15□□□□□ -0.01
SDCBPO00560 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
SDCBPO00560 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC15□□□□□ -0.01
SDCBPO00560 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC15□□□□□ -0.01
SDCBPO00560 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
SDCBPO00560 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
SDCBPO00560 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC15□□□□□ -0.01
SDCBPO00560 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC15□□□□□ -0.01
SDCBPO00560 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
SDCBPO00560 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
SDCBPO00560 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC15□□□□□ -0.01
SDCBPO00560 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC15□□□□□ -0.01
SDCBPO00560 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC15□□□□□ -0.01
SDCBPO00560 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC15□□□□□ -0.01
SDCBPO00560 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
SDCBPO00560 AC133561.5-201ENST00000635547 218 ntBASIC15□□□□□ -0.01
SDCBPO00560 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC15□□□□□ -0.01
SDCBPO00560 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC15□□□□□ -0.01
SDCBPO00560 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
SDCBPO00560 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
SDCBPO00560 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
SDCBPO00560 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC15□□□□□ -0.01
SDCBPO00560 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
SDCBPO00560 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC15□□□□□ -0.01
SDCBPO00560 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms