Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC18.02■□□□□ 0.48
CBX4O00257 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC18.02■□□□□ 0.48
CBX4O00257 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC18.02■□□□□ 0.48
CBX4O00257 CALM3-211ENST00000598871 561 ntTSL 4 BASIC18.02■□□□□ 0.48
CBX4O00257 AC008608.2-201ENST00000606089 416 ntBASIC18.02■□□□□ 0.48
CBX4O00257 GPALPP1-207ENST00000611650 899 ntBASIC18.02■□□□□ 0.48
CBX4O00257 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC18.02■□□□□ 0.47
CBX4O00257 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CBX4O00257 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.47
CBX4O00257 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
CBX4O00257 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CBX4O00257 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC18.02■□□□□ 0.47
CBX4O00257 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.47
CBX4O00257 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC18.02■□□□□ 0.47
CBX4O00257 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CBX4O00257 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CBX4O00257 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC18.02■□□□□ 0.47
CBX4O00257 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
CBX4O00257 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC18.01■□□□□ 0.47
CBX4O00257 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CBX4O00257 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CBX4O00257 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CBX4O00257 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
CBX4O00257 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC18.01■□□□□ 0.47
CBX4O00257 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
CBX4O00257 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
CBX4O00257 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CBX4O00257 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC18.01■□□□□ 0.47
CBX4O00257 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC18.01■□□□□ 0.47
CBX4O00257 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC18.01■□□□□ 0.47
CBX4O00257 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC18.01■□□□□ 0.47
CBX4O00257 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC18.01■□□□□ 0.47
CBX4O00257 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC18.01■□□□□ 0.47
CBX4O00257 MTDHP3-201ENST00000594186 672 ntBASIC18.01■□□□□ 0.47
CBX4O00257 AL121912.1-201ENST00000603683 238 ntBASIC18.01■□□□□ 0.47
CBX4O00257 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC18.01■□□□□ 0.47
CBX4O00257 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC18.01■□□□□ 0.47
CBX4O00257 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CBX4O00257 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC18.01■□□□□ 0.47
CBX4O00257 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC18.01■□□□□ 0.47
CBX4O00257 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC18.01■□□□□ 0.47
CBX4O00257 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CBX4O00257 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
CBX4O00257 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CBX4O00257 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
CBX4O00257 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC18■□□□□ 0.47
CBX4O00257 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC18■□□□□ 0.47
CBX4O00257 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC18■□□□□ 0.47
CBX4O00257 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC18■□□□□ 0.47
CBX4O00257 AC008764.6-201ENST00000595909 2069 ntBASIC18■□□□□ 0.47
CBX4O00257 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CBX4O00257 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CBX4O00257 AP005117.1-201ENST00000584346 1413 ntBASIC18■□□□□ 0.47
CBX4O00257 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC18■□□□□ 0.47
CBX4O00257 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC18■□□□□ 0.47
CBX4O00257 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CBX4O00257 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC18■□□□□ 0.47
CBX4O00257 RBM17P3-201ENST00000417687 1192 ntBASIC18■□□□□ 0.47
CBX4O00257 SLC25A6P5-201ENST00000435663 894 ntBASIC18■□□□□ 0.47
CBX4O00257 SRP19-202ENST00000445150 833 ntTSL 2 BASIC18■□□□□ 0.47
CBX4O00257 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC18■□□□□ 0.47
CBX4O00257 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC18■□□□□ 0.47
CBX4O00257 AC106795.1-205ENST00000512851 1056 ntBASIC18■□□□□ 0.47
CBX4O00257 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC18■□□□□ 0.47
CBX4O00257 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC18■□□□□ 0.47
CBX4O00257 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC18■□□□□ 0.47
CBX4O00257 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CBX4O00257 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC18■□□□□ 0.47
CBX4O00257 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC18■□□□□ 0.47
CBX4O00257 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC18■□□□□ 0.47
CBX4O00257 AC006538.3-201ENST00000612495 578 ntBASIC18■□□□□ 0.47
CBX4O00257 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CBX4O00257 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC18■□□□□ 0.47
CBX4O00257 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC18■□□□□ 0.47
CBX4O00257 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
CBX4O00257 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC18■□□□□ 0.47
CBX4O00257 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
CBX4O00257 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC18■□□□□ 0.47
CBX4O00257 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
CBX4O00257 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CBX4O00257 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CBX4O00257 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC17.99■□□□□ 0.47
CBX4O00257 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC17.99■□□□□ 0.47
CBX4O00257 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC17.99■□□□□ 0.47
CBX4O00257 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC17.99■□□□□ 0.47
CBX4O00257 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CBX4O00257 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
CBX4O00257 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC17.99■□□□□ 0.47
CBX4O00257 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CBX4O00257 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
CBX4O00257 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
CBX4O00257 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CBX4O00257 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CBX4O00257 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CBX4O00257 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CBX4O00257 IRF8-202ENST00000562492 946 ntTSL 3 BASIC17.99■□□□□ 0.47
CBX4O00257 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC17.99■□□□□ 0.47
CBX4O00257 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
CBX4O00257 AC120114.3-201ENST00000611923 658 ntBASIC17.99■□□□□ 0.47
CBX4O00257 AL355877.3-201ENST00000622820 899 ntBASIC17.99■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms