Protein–RNA interactions for Protein: E9PIF3

NPIPA2, Nuclear pore complex-interacting protein family member A2, humanhuman

Predictions only

Length 369 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPIPA2E9PIF3 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
NPIPA2E9PIF3 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
NPIPA2E9PIF3 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
NPIPA2E9PIF3 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
NPIPA2E9PIF3 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
NPIPA2E9PIF3 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
NPIPA2E9PIF3 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
NPIPA2E9PIF3 TEX30-205ENST00000376029 959 ntTSL 2 BASIC16.07■□□□□ 0.16
NPIPA2E9PIF3 TLE1-202ENST00000376484 666 ntTSL 3 BASIC16.07■□□□□ 0.16
NPIPA2E9PIF3 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
NPIPA2E9PIF3 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC16.07■□□□□ 0.16
NPIPA2E9PIF3 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC16.07■□□□□ 0.16
NPIPA2E9PIF3 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
NPIPA2E9PIF3 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
NPIPA2E9PIF3 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
NPIPA2E9PIF3 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
NPIPA2E9PIF3 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
NPIPA2E9PIF3 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC16.07■□□□□ 0.16
NPIPA2E9PIF3 AP000997.3-201ENST00000623333 2250 ntBASIC16.07■□□□□ 0.16
NPIPA2E9PIF3 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
NPIPA2E9PIF3 PXK-206ENST00000463280 2825 ntTSL 2 BASIC16.07■□□□□ 0.16
NPIPA2E9PIF3 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
NPIPA2E9PIF3 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
NPIPA2E9PIF3 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
NPIPA2E9PIF3 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC16.06■□□□□ 0.16
NPIPA2E9PIF3 CD276-201ENST00000318424 2738 ntTSL 5 BASIC16.06■□□□□ 0.16
NPIPA2E9PIF3 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC16.06■□□□□ 0.16
NPIPA2E9PIF3 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC16.06■□□□□ 0.16
NPIPA2E9PIF3 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC16.06■□□□□ 0.16
NPIPA2E9PIF3 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC16.06■□□□□ 0.16
NPIPA2E9PIF3 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
NPIPA2E9PIF3 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
NPIPA2E9PIF3 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
NPIPA2E9PIF3 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
NPIPA2E9PIF3 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
NPIPA2E9PIF3 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
NPIPA2E9PIF3 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
NPIPA2E9PIF3 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
NPIPA2E9PIF3 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC16.06■□□□□ 0.16
NPIPA2E9PIF3 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
NPIPA2E9PIF3 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
NPIPA2E9PIF3 TBC1D3P5-201ENST00000579401 1545 ntBASIC16.06■□□□□ 0.16
NPIPA2E9PIF3 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC16.06■□□□□ 0.16
NPIPA2E9PIF3 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC16.06■□□□□ 0.16
NPIPA2E9PIF3 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
NPIPA2E9PIF3 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
NPIPA2E9PIF3 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
NPIPA2E9PIF3 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
NPIPA2E9PIF3 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
NPIPA2E9PIF3 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
NPIPA2E9PIF3 IL9RP2-201ENST00000423948 1312 ntBASIC16.06■□□□□ 0.16
NPIPA2E9PIF3 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC16.06■□□□□ 0.16
NPIPA2E9PIF3 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
NPIPA2E9PIF3 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC16.06■□□□□ 0.16
NPIPA2E9PIF3 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
NPIPA2E9PIF3 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC16.06■□□□□ 0.16
NPIPA2E9PIF3 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
NPIPA2E9PIF3 RNA5SP419-201ENST00000515908 135 ntBASIC16.06■□□□□ 0.16
NPIPA2E9PIF3 DUTP2-201ENST00000519164 463 ntBASIC16.06■□□□□ 0.16
NPIPA2E9PIF3 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC16.06■□□□□ 0.16
NPIPA2E9PIF3 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC16.06■□□□□ 0.16
NPIPA2E9PIF3 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC16.06■□□□□ 0.16
NPIPA2E9PIF3 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC16.06■□□□□ 0.16
NPIPA2E9PIF3 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC16.06■□□□□ 0.16
NPIPA2E9PIF3 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
NPIPA2E9PIF3 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
NPIPA2E9PIF3 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
NPIPA2E9PIF3 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
NPIPA2E9PIF3 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC16.06■□□□□ 0.16
NPIPA2E9PIF3 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC16.06■□□□□ 0.16
NPIPA2E9PIF3 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
NPIPA2E9PIF3 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
NPIPA2E9PIF3 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
NPIPA2E9PIF3 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
NPIPA2E9PIF3 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC16.06■□□□□ 0.16
NPIPA2E9PIF3 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
NPIPA2E9PIF3 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC16.05■□□□□ 0.16
NPIPA2E9PIF3 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
NPIPA2E9PIF3 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
NPIPA2E9PIF3 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
NPIPA2E9PIF3 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
NPIPA2E9PIF3 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
NPIPA2E9PIF3 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC16.05■□□□□ 0.16
NPIPA2E9PIF3 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC16.05■□□□□ 0.16
NPIPA2E9PIF3 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
NPIPA2E9PIF3 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
NPIPA2E9PIF3 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC16.05■□□□□ 0.16
NPIPA2E9PIF3 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
NPIPA2E9PIF3 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC16.05■□□□□ 0.16
NPIPA2E9PIF3 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC16.05■□□□□ 0.16
NPIPA2E9PIF3 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
NPIPA2E9PIF3 AP005117.1-201ENST00000584346 1413 ntBASIC16.05■□□□□ 0.16
NPIPA2E9PIF3 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC16.05■□□□□ 0.16
NPIPA2E9PIF3 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
NPIPA2E9PIF3 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
NPIPA2E9PIF3 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
NPIPA2E9PIF3 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC16.05■□□□□ 0.16
NPIPA2E9PIF3 ABCD1P5-201ENST00000445663 754 ntBASIC16.05■□□□□ 0.16
NPIPA2E9PIF3 RBSN-204ENST00000449050 903 ntTSL 2 BASIC16.05■□□□□ 0.16
NPIPA2E9PIF3 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC16.05■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms