Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
TCRBV7S3A2A0A539 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC17.91■□□□□ 0.46
TCRBV7S3A2A0A539 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC17.91■□□□□ 0.46
TCRBV7S3A2A0A539 SLC25A1P3-201ENST00000395415 828 ntBASIC17.91■□□□□ 0.46
TCRBV7S3A2A0A539 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC17.91■□□□□ 0.46
TCRBV7S3A2A0A539 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
TCRBV7S3A2A0A539 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC17.91■□□□□ 0.46
TCRBV7S3A2A0A539 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC17.91■□□□□ 0.46
TCRBV7S3A2A0A539 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC17.91■□□□□ 0.46
TCRBV7S3A2A0A539 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
TCRBV7S3A2A0A539 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC17.91■□□□□ 0.46
TCRBV7S3A2A0A539 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
TCRBV7S3A2A0A539 AL139327.4-201ENST00000612362 153 ntBASIC17.91■□□□□ 0.46
TCRBV7S3A2A0A539 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
TCRBV7S3A2A0A539 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
TCRBV7S3A2A0A539 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC17.91■□□□□ 0.46
TCRBV7S3A2A0A539 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TCRBV7S3A2A0A539 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TCRBV7S3A2A0A539 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
TCRBV7S3A2A0A539 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC17.91■□□□□ 0.46
TCRBV7S3A2A0A539 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TCRBV7S3A2A0A539 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TCRBV7S3A2A0A539 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TCRBV7S3A2A0A539 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC17.91■□□□□ 0.46
TCRBV7S3A2A0A539 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
TCRBV7S3A2A0A539 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TCRBV7S3A2A0A539 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TCRBV7S3A2A0A539 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC17.91■□□□□ 0.46
TCRBV7S3A2A0A539 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
TCRBV7S3A2A0A539 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC17.91■□□□□ 0.46
TCRBV7S3A2A0A539 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
TCRBV7S3A2A0A539 PC-208ENST00000529047 1607 ntTSL 3 BASIC17.9■□□□□ 0.46
TCRBV7S3A2A0A539 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
TCRBV7S3A2A0A539 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
TCRBV7S3A2A0A539 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
TCRBV7S3A2A0A539 AGGF1P2-201ENST00000426656 2106 ntBASIC17.9■□□□□ 0.46
TCRBV7S3A2A0A539 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC17.9■□□□□ 0.46
TCRBV7S3A2A0A539 RHBDF1P1-201ENST00000427504 1941 ntBASIC17.9■□□□□ 0.46
TCRBV7S3A2A0A539 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC17.9■□□□□ 0.46
TCRBV7S3A2A0A539 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC17.9■□□□□ 0.46
TCRBV7S3A2A0A539 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC17.9■□□□□ 0.46
TCRBV7S3A2A0A539 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
TCRBV7S3A2A0A539 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
TCRBV7S3A2A0A539 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
TCRBV7S3A2A0A539 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC17.9■□□□□ 0.46
TCRBV7S3A2A0A539 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
TCRBV7S3A2A0A539 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
TCRBV7S3A2A0A539 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
TCRBV7S3A2A0A539 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
TCRBV7S3A2A0A539 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
TCRBV7S3A2A0A539 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
TCRBV7S3A2A0A539 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC17.9■□□□□ 0.46
TCRBV7S3A2A0A539 LY6E-213ENST00000522528 606 ntTSL 3 BASIC17.9■□□□□ 0.46
TCRBV7S3A2A0A539 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
TCRBV7S3A2A0A539 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC17.9■□□□□ 0.46
TCRBV7S3A2A0A539 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC17.9■□□□□ 0.46
TCRBV7S3A2A0A539 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
TCRBV7S3A2A0A539 AC046185.3-201ENST00000623228 1824 ntBASIC17.9■□□□□ 0.46
TCRBV7S3A2A0A539 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC17.9■□□□□ 0.46
TCRBV7S3A2A0A539 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
TCRBV7S3A2A0A539 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
TCRBV7S3A2A0A539 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
TCRBV7S3A2A0A539 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
TCRBV7S3A2A0A539 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.46
TCRBV7S3A2A0A539 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC17.89■□□□□ 0.45
TCRBV7S3A2A0A539 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
TCRBV7S3A2A0A539 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
TCRBV7S3A2A0A539 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
TCRBV7S3A2A0A539 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
TCRBV7S3A2A0A539 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
TCRBV7S3A2A0A539 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC17.89■□□□□ 0.45
TCRBV7S3A2A0A539 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
TCRBV7S3A2A0A539 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
TCRBV7S3A2A0A539 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
TCRBV7S3A2A0A539 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC17.89■□□□□ 0.45
TCRBV7S3A2A0A539 TK1-204ENST00000590430 683 ntTSL 3 BASIC17.89■□□□□ 0.45
TCRBV7S3A2A0A539 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
TCRBV7S3A2A0A539 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
TCRBV7S3A2A0A539 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
TCRBV7S3A2A0A539 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
TCRBV7S3A2A0A539 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC17.89■□□□□ 0.45
TCRBV7S3A2A0A539 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC17.89■□□□□ 0.45
TCRBV7S3A2A0A539 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
TCRBV7S3A2A0A539 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
TCRBV7S3A2A0A539 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
TCRBV7S3A2A0A539 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
TCRBV7S3A2A0A539 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
TCRBV7S3A2A0A539 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC17.89■□□□□ 0.45
TCRBV7S3A2A0A539 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
TCRBV7S3A2A0A539 AMT-250ENST00000637682 1823 ntTSL 5 BASIC17.88■□□□□ 0.45
TCRBV7S3A2A0A539 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC17.88■□□□□ 0.45
TCRBV7S3A2A0A539 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC17.88■□□□□ 0.45
TCRBV7S3A2A0A539 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
TCRBV7S3A2A0A539 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
TCRBV7S3A2A0A539 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
TCRBV7S3A2A0A539 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
TCRBV7S3A2A0A539 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
TCRBV7S3A2A0A539 COX5BP2-201ENST00000392354 334 ntBASIC17.88■□□□□ 0.45
TCRBV7S3A2A0A539 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
TCRBV7S3A2A0A539 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC17.88■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms