Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
AP4E1Q9UPM8 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
AP4E1Q9UPM8 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC18.31■□□□□ 0.52
AP4E1Q9UPM8 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC18.3■□□□□ 0.52
AP4E1Q9UPM8 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
AP4E1Q9UPM8 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
AP4E1Q9UPM8 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
AP4E1Q9UPM8 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
AP4E1Q9UPM8 NSUN5P1-202ENST00000421140 1535 ntBASIC18.3■□□□□ 0.52
AP4E1Q9UPM8 NSUN5P2-203ENST00000457352 1529 ntBASIC18.3■□□□□ 0.52
AP4E1Q9UPM8 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
AP4E1Q9UPM8 BOC-212ENST00000485230 2173 ntTSL 2 BASIC18.3■□□□□ 0.52
AP4E1Q9UPM8 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
AP4E1Q9UPM8 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
AP4E1Q9UPM8 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
AP4E1Q9UPM8 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
AP4E1Q9UPM8 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
AP4E1Q9UPM8 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
AP4E1Q9UPM8 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
AP4E1Q9UPM8 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
AP4E1Q9UPM8 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
AP4E1Q9UPM8 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
AP4E1Q9UPM8 FAM220CP-201ENST00000395253 831 ntBASIC18.3■□□□□ 0.52
AP4E1Q9UPM8 UPK3BP1-201ENST00000428678 509 ntBASIC18.3■□□□□ 0.52
AP4E1Q9UPM8 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
AP4E1Q9UPM8 MINOS1P3-201ENST00000457048 203 ntBASIC18.3■□□□□ 0.52
AP4E1Q9UPM8 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC18.3■□□□□ 0.52
AP4E1Q9UPM8 CDV3-207ENST00000508481 661 ntTSL 3 BASIC18.3■□□□□ 0.52
AP4E1Q9UPM8 AP000867.3-201ENST00000524675 377 ntBASIC18.3■□□□□ 0.52
AP4E1Q9UPM8 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC18.3■□□□□ 0.52
AP4E1Q9UPM8 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC18.3■□□□□ 0.52
AP4E1Q9UPM8 AC074051.2-201ENST00000565115 352 ntBASIC18.3■□□□□ 0.52
AP4E1Q9UPM8 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC18.3■□□□□ 0.52
AP4E1Q9UPM8 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
AP4E1Q9UPM8 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC18.3■□□□□ 0.52
AP4E1Q9UPM8 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
AP4E1Q9UPM8 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
AP4E1Q9UPM8 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
AP4E1Q9UPM8 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
AP4E1Q9UPM8 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
AP4E1Q9UPM8 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
AP4E1Q9UPM8 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
AP4E1Q9UPM8 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
AP4E1Q9UPM8 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
AP4E1Q9UPM8 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
AP4E1Q9UPM8 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
AP4E1Q9UPM8 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC18.29■□□□□ 0.52
AP4E1Q9UPM8 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
AP4E1Q9UPM8 WAC-202ENST00000347934 2839 ntTSL 5 BASIC18.29■□□□□ 0.52
AP4E1Q9UPM8 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
AP4E1Q9UPM8 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC18.29■□□□□ 0.52
AP4E1Q9UPM8 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
AP4E1Q9UPM8 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
AP4E1Q9UPM8 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
AP4E1Q9UPM8 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC18.29■□□□□ 0.52
AP4E1Q9UPM8 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
AP4E1Q9UPM8 CCS-201ENST00000310190 942 ntTSL 5 BASIC18.29■□□□□ 0.52
AP4E1Q9UPM8 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
AP4E1Q9UPM8 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
AP4E1Q9UPM8 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
AP4E1Q9UPM8 IGHV3-47-201ENST00000425060 335 ntBASIC18.29■□□□□ 0.52
AP4E1Q9UPM8 DANCR-204ENST00000444958 709 ntTSL 3 BASIC18.29■□□□□ 0.52
AP4E1Q9UPM8 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC18.29■□□□□ 0.52
AP4E1Q9UPM8 AC002558.1-201ENST00000488906 803 ntBASIC18.29■□□□□ 0.52
AP4E1Q9UPM8 AC122714.2-201ENST00000502787 707 ntBASIC18.29■□□□□ 0.52
AP4E1Q9UPM8 AC104819.1-201ENST00000504587 486 ntBASIC18.29■□□□□ 0.52
AP4E1Q9UPM8 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC18.29■□□□□ 0.52
AP4E1Q9UPM8 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC18.29■□□□□ 0.52
AP4E1Q9UPM8 AC092329.2-201ENST00000598402 547 ntBASIC18.29■□□□□ 0.52
AP4E1Q9UPM8 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
AP4E1Q9UPM8 AC139713.2-201ENST00000641328 2723 ntBASIC18.29■□□□□ 0.52
AP4E1Q9UPM8 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
AP4E1Q9UPM8 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
AP4E1Q9UPM8 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC18.29■□□□□ 0.52
AP4E1Q9UPM8 SIRPAP1-201ENST00000448467 1770 ntBASIC18.29■□□□□ 0.52
AP4E1Q9UPM8 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
AP4E1Q9UPM8 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC18.29■□□□□ 0.52
AP4E1Q9UPM8 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC18.29■□□□□ 0.52
AP4E1Q9UPM8 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC18.29■□□□□ 0.52
AP4E1Q9UPM8 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
AP4E1Q9UPM8 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
AP4E1Q9UPM8 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC18.29■□□□□ 0.52
AP4E1Q9UPM8 AC141586.5-201ENST00000624546 2050 ntBASIC18.29■□□□□ 0.52
AP4E1Q9UPM8 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
AP4E1Q9UPM8 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
AP4E1Q9UPM8 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC18.28■□□□□ 0.52
AP4E1Q9UPM8 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC18.28■□□□□ 0.52
AP4E1Q9UPM8 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC18.28■□□□□ 0.52
AP4E1Q9UPM8 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC18.28■□□□□ 0.52
AP4E1Q9UPM8 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC18.28■□□□□ 0.52
AP4E1Q9UPM8 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
AP4E1Q9UPM8 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC18.28■□□□□ 0.52
AP4E1Q9UPM8 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC18.28■□□□□ 0.52
AP4E1Q9UPM8 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC18.28■□□□□ 0.52
AP4E1Q9UPM8 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
AP4E1Q9UPM8 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC18.28■□□□□ 0.52
AP4E1Q9UPM8 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC18.28■□□□□ 0.52
AP4E1Q9UPM8 BNIP3P18-201ENST00000593976 575 ntBASIC18.28■□□□□ 0.52
AP4E1Q9UPM8 AC011467.2-201ENST00000598425 242 ntBASIC18.28■□□□□ 0.52
AP4E1Q9UPM8 AC019129.2-201ENST00000609837 1235 ntBASIC18.28■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms