Protein–RNA interactions for Protein: Q9NR12

PDLIM7, PDZ and LIM domain protein 7, humanhuman

Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM7Q9NR12 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
PDLIM7Q9NR12 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC19.66■□□□□ 0.74
PDLIM7Q9NR12 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC19.66■□□□□ 0.74
PDLIM7Q9NR12 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
PDLIM7Q9NR12 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
PDLIM7Q9NR12 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC19.66■□□□□ 0.74
PDLIM7Q9NR12 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC19.66■□□□□ 0.74
PDLIM7Q9NR12 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
PDLIM7Q9NR12 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
PDLIM7Q9NR12 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC19.66■□□□□ 0.74
PDLIM7Q9NR12 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
PDLIM7Q9NR12 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
PDLIM7Q9NR12 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
PDLIM7Q9NR12 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
PDLIM7Q9NR12 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
PDLIM7Q9NR12 METTL26-205ENST00000397666 726 ntTSL 2 BASIC19.66■□□□□ 0.74
PDLIM7Q9NR12 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
PDLIM7Q9NR12 CRYGEP-201ENST00000412192 528 ntBASIC19.66■□□□□ 0.74
PDLIM7Q9NR12 DDX43P3-201ENST00000441064 443 ntBASIC19.66■□□□□ 0.74
PDLIM7Q9NR12 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC19.66■□□□□ 0.74
PDLIM7Q9NR12 PRYP5-201ENST00000451909 266 ntBASIC19.66■□□□□ 0.74
PDLIM7Q9NR12 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC19.66■□□□□ 0.74
PDLIM7Q9NR12 SPCS2P1-201ENST00000561636 679 ntBASIC19.66■□□□□ 0.74
PDLIM7Q9NR12 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
PDLIM7Q9NR12 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC19.66■□□□□ 0.74
PDLIM7Q9NR12 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC19.66■□□□□ 0.74
PDLIM7Q9NR12 AC027612.4-201ENST00000605371 583 ntBASIC19.66■□□□□ 0.74
PDLIM7Q9NR12 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
PDLIM7Q9NR12 AL513190.1-201ENST00000621254 727 ntBASIC19.66■□□□□ 0.74
PDLIM7Q9NR12 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC19.66■□□□□ 0.74
PDLIM7Q9NR12 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
PDLIM7Q9NR12 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
PDLIM7Q9NR12 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
PDLIM7Q9NR12 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
PDLIM7Q9NR12 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC19.66■□□□□ 0.74
PDLIM7Q9NR12 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
PDLIM7Q9NR12 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
PDLIM7Q9NR12 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
PDLIM7Q9NR12 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
PDLIM7Q9NR12 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
PDLIM7Q9NR12 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
PDLIM7Q9NR12 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
PDLIM7Q9NR12 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
PDLIM7Q9NR12 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC19.65■□□□□ 0.74
PDLIM7Q9NR12 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC19.65■□□□□ 0.74
PDLIM7Q9NR12 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC19.65■□□□□ 0.74
PDLIM7Q9NR12 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
PDLIM7Q9NR12 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC19.65■□□□□ 0.74
PDLIM7Q9NR12 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC19.65■□□□□ 0.74
PDLIM7Q9NR12 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC19.65■□□□□ 0.74
PDLIM7Q9NR12 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC19.65■□□□□ 0.74
PDLIM7Q9NR12 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
PDLIM7Q9NR12 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC19.65■□□□□ 0.74
PDLIM7Q9NR12 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC19.65■□□□□ 0.74
PDLIM7Q9NR12 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
PDLIM7Q9NR12 AL390961.4-201ENST00000623958 2535 ntBASIC19.65■□□□□ 0.74
PDLIM7Q9NR12 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC19.65■□□□□ 0.74
PDLIM7Q9NR12 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC19.65■□□□□ 0.74
PDLIM7Q9NR12 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
PDLIM7Q9NR12 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC19.65■□□□□ 0.74
PDLIM7Q9NR12 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
PDLIM7Q9NR12 ADM-208ENST00000534464 1640 ntTSL 2 BASIC19.65■□□□□ 0.74
PDLIM7Q9NR12 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
PDLIM7Q9NR12 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
PDLIM7Q9NR12 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC19.65■□□□□ 0.74
PDLIM7Q9NR12 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC19.65■□□□□ 0.74
PDLIM7Q9NR12 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
PDLIM7Q9NR12 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC19.65■□□□□ 0.74
PDLIM7Q9NR12 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
PDLIM7Q9NR12 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC19.64■□□□□ 0.74
PDLIM7Q9NR12 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.74
PDLIM7Q9NR12 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
PDLIM7Q9NR12 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC19.64■□□□□ 0.73
PDLIM7Q9NR12 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC19.64■□□□□ 0.73
PDLIM7Q9NR12 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC19.64■□□□□ 0.73
PDLIM7Q9NR12 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
PDLIM7Q9NR12 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC19.64■□□□□ 0.73
PDLIM7Q9NR12 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC19.64■□□□□ 0.73
PDLIM7Q9NR12 AD001527.2-201ENST00000622994 785 ntBASIC19.64■□□□□ 0.73
PDLIM7Q9NR12 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC19.64■□□□□ 0.73
PDLIM7Q9NR12 SIGLEC16-201ENST00000599858 1437 ntBASIC19.64■□□□□ 0.73
PDLIM7Q9NR12 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
PDLIM7Q9NR12 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC19.64■□□□□ 0.73
PDLIM7Q9NR12 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
PDLIM7Q9NR12 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC19.64■□□□□ 0.73
PDLIM7Q9NR12 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC19.64■□□□□ 0.73
PDLIM7Q9NR12 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC19.64■□□□□ 0.73
PDLIM7Q9NR12 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC19.64■□□□□ 0.73
PDLIM7Q9NR12 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
PDLIM7Q9NR12 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
PDLIM7Q9NR12 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC19.64■□□□□ 0.73
PDLIM7Q9NR12 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
PDLIM7Q9NR12 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
PDLIM7Q9NR12 CD276-201ENST00000318424 2738 ntTSL 5 BASIC19.63■□□□□ 0.73
PDLIM7Q9NR12 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
PDLIM7Q9NR12 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
PDLIM7Q9NR12 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
PDLIM7Q9NR12 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC19.63■□□□□ 0.73
PDLIM7Q9NR12 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
PDLIM7Q9NR12 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms