Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
TRAIPQ9BWF2 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRAIPQ9BWF2 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC19.32■□□□□ 0.68
TRAIPQ9BWF2 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC19.32■□□□□ 0.68
TRAIPQ9BWF2 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC19.32■□□□□ 0.68
TRAIPQ9BWF2 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRAIPQ9BWF2 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
TRAIPQ9BWF2 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRAIPQ9BWF2 SIGLEC16-201ENST00000599858 1437 ntBASIC19.32■□□□□ 0.68
TRAIPQ9BWF2 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRAIPQ9BWF2 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
TRAIPQ9BWF2 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRAIPQ9BWF2 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
TRAIPQ9BWF2 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
TRAIPQ9BWF2 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRAIPQ9BWF2 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRAIPQ9BWF2 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC19.31■□□□□ 0.68
TRAIPQ9BWF2 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRAIPQ9BWF2 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRAIPQ9BWF2 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC19.31■□□□□ 0.68
TRAIPQ9BWF2 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
TRAIPQ9BWF2 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC19.31■□□□□ 0.68
TRAIPQ9BWF2 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC19.31■□□□□ 0.68
TRAIPQ9BWF2 RPS2P1-201ENST00000434010 821 ntBASIC19.31■□□□□ 0.68
TRAIPQ9BWF2 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRAIPQ9BWF2 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC19.31■□□□□ 0.68
TRAIPQ9BWF2 RPL13AP23-201ENST00000480739 586 ntBASIC19.31■□□□□ 0.68
TRAIPQ9BWF2 KRT18P58-201ENST00000527480 1120 ntBASIC19.31■□□□□ 0.68
TRAIPQ9BWF2 OR7E14P-202ENST00000530490 1290 ntBASIC19.31■□□□□ 0.68
TRAIPQ9BWF2 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
TRAIPQ9BWF2 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC19.31■□□□□ 0.68
TRAIPQ9BWF2 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
TRAIPQ9BWF2 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC19.31■□□□□ 0.68
TRAIPQ9BWF2 AC107918.4-202ENST00000641623 219 ntBASIC19.31■□□□□ 0.68
TRAIPQ9BWF2 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC19.31■□□□□ 0.68
TRAIPQ9BWF2 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRAIPQ9BWF2 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC19.31■□□□□ 0.68
TRAIPQ9BWF2 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRAIPQ9BWF2 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRAIPQ9BWF2 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
TRAIPQ9BWF2 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
TRAIPQ9BWF2 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
TRAIPQ9BWF2 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC19.31■□□□□ 0.68
TRAIPQ9BWF2 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRAIPQ9BWF2 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRAIPQ9BWF2 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC19.31■□□□□ 0.68
TRAIPQ9BWF2 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRAIPQ9BWF2 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
TRAIPQ9BWF2 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC19.3■□□□□ 0.68
TRAIPQ9BWF2 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
TRAIPQ9BWF2 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRAIPQ9BWF2 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRAIPQ9BWF2 HLA-J-201ENST00000462773 1622 ntBASIC19.3■□□□□ 0.68
TRAIPQ9BWF2 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
TRAIPQ9BWF2 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
TRAIPQ9BWF2 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
TRAIPQ9BWF2 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC19.3■□□□□ 0.68
TRAIPQ9BWF2 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
TRAIPQ9BWF2 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC19.3■□□□□ 0.68
TRAIPQ9BWF2 MTDHP4-201ENST00000600287 670 ntBASIC19.3■□□□□ 0.68
TRAIPQ9BWF2 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC19.3■□□□□ 0.68
TRAIPQ9BWF2 AC008735.5-201ENST00000623544 497 ntBASIC19.3■□□□□ 0.68
TRAIPQ9BWF2 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC19.3■□□□□ 0.68
TRAIPQ9BWF2 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRAIPQ9BWF2 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRAIPQ9BWF2 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRAIPQ9BWF2 AC093677.2-201ENST00000600169 1863 ntBASIC19.3■□□□□ 0.68
TRAIPQ9BWF2 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
TRAIPQ9BWF2 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRAIPQ9BWF2 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC19.3■□□□□ 0.68
TRAIPQ9BWF2 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRAIPQ9BWF2 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
TRAIPQ9BWF2 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
TRAIPQ9BWF2 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
TRAIPQ9BWF2 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
TRAIPQ9BWF2 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRAIPQ9BWF2 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC19.29■□□□□ 0.68
TRAIPQ9BWF2 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRAIPQ9BWF2 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC19.29■□□□□ 0.68
TRAIPQ9BWF2 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRAIPQ9BWF2 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
TRAIPQ9BWF2 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRAIPQ9BWF2 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRAIPQ9BWF2 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
TRAIPQ9BWF2 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC19.29■□□□□ 0.68
TRAIPQ9BWF2 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
TRAIPQ9BWF2 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC19.29■□□□□ 0.68
TRAIPQ9BWF2 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC19.29■□□□□ 0.68
TRAIPQ9BWF2 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC19.29■□□□□ 0.68
TRAIPQ9BWF2 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRAIPQ9BWF2 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRAIPQ9BWF2 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
TRAIPQ9BWF2 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC19.29■□□□□ 0.68
TRAIPQ9BWF2 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRAIPQ9BWF2 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC19.29■□□□□ 0.68
TRAIPQ9BWF2 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRAIPQ9BWF2 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRAIPQ9BWF2 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC19.29■□□□□ 0.68
TRAIPQ9BWF2 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
TRAIPQ9BWF2 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 70.9 ms