Protein–RNA interactions for Protein: Q96N23

CFAP54, Cilia- and flagella-associated protein 54, humanhuman

Predictions only

Length 3,096 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CFAP54Q96N23 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CFAP54Q96N23 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
CFAP54Q96N23 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC17.15■□□□□ 0.34
CFAP54Q96N23 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CFAP54Q96N23 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CFAP54Q96N23 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CFAP54Q96N23 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CFAP54Q96N23 AC092933.1-201ENST00000393644 945 ntBASIC17.15■□□□□ 0.34
CFAP54Q96N23 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC17.15■□□□□ 0.34
CFAP54Q96N23 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC17.15■□□□□ 0.34
CFAP54Q96N23 IFITM3-202ENST00000526811 543 ntAPPRIS ALT1 TSL 5 BASIC17.15■□□□□ 0.34
CFAP54Q96N23 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC17.15■□□□□ 0.34
CFAP54Q96N23 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CFAP54Q96N23 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC17.15■□□□□ 0.34
CFAP54Q96N23 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC17.15■□□□□ 0.34
CFAP54Q96N23 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CFAP54Q96N23 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
CFAP54Q96N23 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CFAP54Q96N23 REXO1L6P-201ENST00000603433 1515 ntBASIC17.15■□□□□ 0.34
CFAP54Q96N23 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC17.15■□□□□ 0.34
CFAP54Q96N23 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC17.15■□□□□ 0.34
CFAP54Q96N23 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC17.15■□□□□ 0.34
CFAP54Q96N23 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
CFAP54Q96N23 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC17.15■□□□□ 0.34
CFAP54Q96N23 AC132938.2-201ENST00000579188 680 ntBASIC17.15■□□□□ 0.34
CFAP54Q96N23 AL591163.1-201ENST00000641757 987 ntBASIC17.15■□□□□ 0.34
CFAP54Q96N23 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CFAP54Q96N23 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC17.15■□□□□ 0.34
CFAP54Q96N23 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CFAP54Q96N23 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC17.15■□□□□ 0.34
CFAP54Q96N23 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CFAP54Q96N23 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
CFAP54Q96N23 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC17.15■□□□□ 0.34
CFAP54Q96N23 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CFAP54Q96N23 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CFAP54Q96N23 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
CFAP54Q96N23 FAM86MP-201ENST00000340703 885 ntBASIC17.15■□□□□ 0.34
CFAP54Q96N23 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
CFAP54Q96N23 AL592309.1-201ENST00000443127 649 ntBASIC17.15■□□□□ 0.34
CFAP54Q96N23 TMPRSS11CP-201ENST00000453277 683 ntBASIC17.15■□□□□ 0.34
CFAP54Q96N23 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CFAP54Q96N23 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
CFAP54Q96N23 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC17.14■□□□□ 0.34
CFAP54Q96N23 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
CFAP54Q96N23 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CFAP54Q96N23 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
CFAP54Q96N23 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC17.14■□□□□ 0.33
CFAP54Q96N23 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC17.14■□□□□ 0.33
CFAP54Q96N23 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CFAP54Q96N23 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC17.14■□□□□ 0.33
CFAP54Q96N23 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC17.14■□□□□ 0.33
CFAP54Q96N23 LINC01806-201ENST00000436506 765 ntTSL 2 BASIC17.14■□□□□ 0.33
CFAP54Q96N23 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC17.14■□□□□ 0.33
CFAP54Q96N23 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CFAP54Q96N23 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
CFAP54Q96N23 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CFAP54Q96N23 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CFAP54Q96N23 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CFAP54Q96N23 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CFAP54Q96N23 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CFAP54Q96N23 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
CFAP54Q96N23 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CFAP54Q96N23 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
CFAP54Q96N23 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
CFAP54Q96N23 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC17.14■□□□□ 0.33
CFAP54Q96N23 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
CFAP54Q96N23 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CFAP54Q96N23 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC17.14■□□□□ 0.33
CFAP54Q96N23 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CFAP54Q96N23 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC17.14■□□□□ 0.33
CFAP54Q96N23 AC099568.2-201ENST00000609194 695 ntBASIC17.14■□□□□ 0.33
CFAP54Q96N23 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CFAP54Q96N23 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CFAP54Q96N23 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CFAP54Q96N23 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
CFAP54Q96N23 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC17.13■□□□□ 0.33
CFAP54Q96N23 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CFAP54Q96N23 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC17.13■□□□□ 0.33
CFAP54Q96N23 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC17.13■□□□□ 0.33
CFAP54Q96N23 TSFM-210ENST00000550559 897 ntTSL 5 BASIC17.13■□□□□ 0.33
CFAP54Q96N23 RN7SL190P-201ENST00000582519 257 ntBASIC17.13■□□□□ 0.33
CFAP54Q96N23 AD001527.2-201ENST00000622994 785 ntBASIC17.13■□□□□ 0.33
CFAP54Q96N23 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CFAP54Q96N23 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CFAP54Q96N23 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CFAP54Q96N23 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC17.13■□□□□ 0.33
CFAP54Q96N23 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC17.13■□□□□ 0.33
CFAP54Q96N23 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CFAP54Q96N23 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CFAP54Q96N23 AC119751.2-201ENST00000504529 210 ntBASIC17.13■□□□□ 0.33
CFAP54Q96N23 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC17.13■□□□□ 0.33
CFAP54Q96N23 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CFAP54Q96N23 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
CFAP54Q96N23 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CFAP54Q96N23 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CFAP54Q96N23 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
CFAP54Q96N23 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC17.12■□□□□ 0.33
CFAP54Q96N23 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC17.12■□□□□ 0.33
CFAP54Q96N23 AC129492.6-201ENST00000611383 1305 ntBASIC17.12■□□□□ 0.33
CFAP54Q96N23 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms