Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC21.05■□□□□ 0.96
CHMP4CQ96CF2 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC21.05■□□□□ 0.96
CHMP4CQ96CF2 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
CHMP4CQ96CF2 AC096582.2-201ENST00000510860 516 ntBASIC21.05■□□□□ 0.96
CHMP4CQ96CF2 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC21.05■□□□□ 0.96
CHMP4CQ96CF2 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC21.05■□□□□ 0.96
CHMP4CQ96CF2 WDR88-203ENST00000592765 651 ntTSL 5 BASIC21.05■□□□□ 0.96
CHMP4CQ96CF2 AC005336.2-201ENST00000593183 939 ntBASIC21.05■□□□□ 0.96
CHMP4CQ96CF2 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
CHMP4CQ96CF2 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
CHMP4CQ96CF2 AL691432.3-201ENST00000621860 400 ntBASIC21.05■□□□□ 0.96
CHMP4CQ96CF2 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC21.05■□□□□ 0.96
CHMP4CQ96CF2 LINC00896-202ENST00000609602 2128 ntBASIC21.05■□□□□ 0.96
CHMP4CQ96CF2 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
CHMP4CQ96CF2 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC21.05■□□□□ 0.96
CHMP4CQ96CF2 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC21.05■□□□□ 0.96
CHMP4CQ96CF2 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CHMP4CQ96CF2 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
CHMP4CQ96CF2 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CHMP4CQ96CF2 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CHMP4CQ96CF2 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CHMP4CQ96CF2 DFFB-203ENST00000341385 572 ntTSL 5 BASIC21.04■□□□□ 0.96
CHMP4CQ96CF2 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CHMP4CQ96CF2 DDT-203ENST00000403754 569 ntTSL 3 BASIC21.04■□□□□ 0.96
CHMP4CQ96CF2 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CHMP4CQ96CF2 DDT-206ENST00000430101 573 ntTSL 2 BASIC21.04■□□□□ 0.96
CHMP4CQ96CF2 TPM4P1-201ENST00000436100 807 ntBASIC21.04■□□□□ 0.96
CHMP4CQ96CF2 MTCL1P1-201ENST00000446207 792 ntBASIC21.04■□□□□ 0.96
CHMP4CQ96CF2 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC21.04■□□□□ 0.96
CHMP4CQ96CF2 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC21.04■□□□□ 0.96
CHMP4CQ96CF2 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
CHMP4CQ96CF2 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC21.04■□□□□ 0.96
CHMP4CQ96CF2 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
CHMP4CQ96CF2 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC21.04■□□□□ 0.96
CHMP4CQ96CF2 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CHMP4CQ96CF2 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CHMP4CQ96CF2 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CHMP4CQ96CF2 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CHMP4CQ96CF2 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC21.04■□□□□ 0.96
CHMP4CQ96CF2 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC21.04■□□□□ 0.96
CHMP4CQ96CF2 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC21.04■□□□□ 0.96
CHMP4CQ96CF2 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
CHMP4CQ96CF2 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CHMP4CQ96CF2 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC21.03■□□□□ 0.96
CHMP4CQ96CF2 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC21.03■□□□□ 0.96
CHMP4CQ96CF2 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC21.03■□□□□ 0.96
CHMP4CQ96CF2 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC21.03■□□□□ 0.96
CHMP4CQ96CF2 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CHMP4CQ96CF2 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CHMP4CQ96CF2 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CHMP4CQ96CF2 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC21.03■□□□□ 0.96
CHMP4CQ96CF2 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CHMP4CQ96CF2 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CHMP4CQ96CF2 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
CHMP4CQ96CF2 AC079781.3-201ENST00000449110 356 ntBASIC21.03■□□□□ 0.96
CHMP4CQ96CF2 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CHMP4CQ96CF2 VENTXP7-201ENST00000475503 772 ntBASIC21.03■□□□□ 0.96
CHMP4CQ96CF2 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
CHMP4CQ96CF2 AC111152.3-201ENST00000569699 673 ntBASIC21.03■□□□□ 0.96
CHMP4CQ96CF2 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC21.03■□□□□ 0.96
CHMP4CQ96CF2 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
CHMP4CQ96CF2 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CHMP4CQ96CF2 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
CHMP4CQ96CF2 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CHMP4CQ96CF2 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CHMP4CQ96CF2 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC21.03■□□□□ 0.96
CHMP4CQ96CF2 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
CHMP4CQ96CF2 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CHMP4CQ96CF2 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CHMP4CQ96CF2 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CHMP4CQ96CF2 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC21.03■□□□□ 0.96
CHMP4CQ96CF2 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CHMP4CQ96CF2 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.96
CHMP4CQ96CF2 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CHMP4CQ96CF2 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
CHMP4CQ96CF2 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CHMP4CQ96CF2 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CHMP4CQ96CF2 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC21.02■□□□□ 0.96
CHMP4CQ96CF2 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.96
CHMP4CQ96CF2 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC21.02■□□□□ 0.96
CHMP4CQ96CF2 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC21.02■□□□□ 0.96
CHMP4CQ96CF2 BNIP3P18-201ENST00000593976 575 ntBASIC21.02■□□□□ 0.96
CHMP4CQ96CF2 AL121772.3-201ENST00000610840 674 ntBASIC21.02■□□□□ 0.96
CHMP4CQ96CF2 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC21.02■□□□□ 0.96
CHMP4CQ96CF2 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CHMP4CQ96CF2 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
CHMP4CQ96CF2 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC21.02■□□□□ 0.95
CHMP4CQ96CF2 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
CHMP4CQ96CF2 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC21.02■□□□□ 0.95
CHMP4CQ96CF2 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC21.02■□□□□ 0.95
CHMP4CQ96CF2 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CHMP4CQ96CF2 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CHMP4CQ96CF2 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CHMP4CQ96CF2 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CHMP4CQ96CF2 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
CHMP4CQ96CF2 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC21.01■□□□□ 0.95
CHMP4CQ96CF2 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC21.01■□□□□ 0.95
CHMP4CQ96CF2 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC21.01■□□□□ 0.95
CHMP4CQ96CF2 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CHMP4CQ96CF2 DDX43P3-201ENST00000441064 443 ntBASIC21.01■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms