Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC16.39■□□□□ 0.21
ZNF540Q8NDQ6 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
ZNF540Q8NDQ6 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
ZNF540Q8NDQ6 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
ZNF540Q8NDQ6 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
ZNF540Q8NDQ6 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
ZNF540Q8NDQ6 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
ZNF540Q8NDQ6 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
ZNF540Q8NDQ6 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC16.39■□□□□ 0.21
ZNF540Q8NDQ6 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC16.39■□□□□ 0.21
ZNF540Q8NDQ6 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC16.39■□□□□ 0.21
ZNF540Q8NDQ6 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
ZNF540Q8NDQ6 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
ZNF540Q8NDQ6 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC16.39■□□□□ 0.21
ZNF540Q8NDQ6 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC16.39■□□□□ 0.21
ZNF540Q8NDQ6 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC16.39■□□□□ 0.21
ZNF540Q8NDQ6 AL049597.2-201ENST00000565575 961 ntBASIC16.39■□□□□ 0.21
ZNF540Q8NDQ6 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC16.39■□□□□ 0.21
ZNF540Q8NDQ6 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
ZNF540Q8NDQ6 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
ZNF540Q8NDQ6 AC009102.3-201ENST00000623118 1491 ntBASIC16.39■□□□□ 0.21
ZNF540Q8NDQ6 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
ZNF540Q8NDQ6 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC16.39■□□□□ 0.21
ZNF540Q8NDQ6 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
ZNF540Q8NDQ6 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC16.39■□□□□ 0.21
ZNF540Q8NDQ6 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
ZNF540Q8NDQ6 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
ZNF540Q8NDQ6 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
ZNF540Q8NDQ6 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
ZNF540Q8NDQ6 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
ZNF540Q8NDQ6 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
ZNF540Q8NDQ6 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
ZNF540Q8NDQ6 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
ZNF540Q8NDQ6 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
ZNF540Q8NDQ6 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
ZNF540Q8NDQ6 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC16.38■□□□□ 0.21
ZNF540Q8NDQ6 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
ZNF540Q8NDQ6 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
ZNF540Q8NDQ6 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
ZNF540Q8NDQ6 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
ZNF540Q8NDQ6 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
ZNF540Q8NDQ6 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC16.38■□□□□ 0.21
ZNF540Q8NDQ6 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
ZNF540Q8NDQ6 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
ZNF540Q8NDQ6 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
ZNF540Q8NDQ6 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
ZNF540Q8NDQ6 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
ZNF540Q8NDQ6 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
ZNF540Q8NDQ6 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC16.38■□□□□ 0.21
ZNF540Q8NDQ6 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
ZNF540Q8NDQ6 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
ZNF540Q8NDQ6 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
ZNF540Q8NDQ6 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC16.38■□□□□ 0.21
ZNF540Q8NDQ6 LIN28AP1-201ENST00000429574 405 ntBASIC16.38■□□□□ 0.21
ZNF540Q8NDQ6 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC16.38■□□□□ 0.21
ZNF540Q8NDQ6 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
ZNF540Q8NDQ6 P4HB-223ENST00000576390 439 ntTSL 4 BASIC16.38■□□□□ 0.21
ZNF540Q8NDQ6 RN7SL850P-201ENST00000579959 291 ntBASIC16.38■□□□□ 0.21
ZNF540Q8NDQ6 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
ZNF540Q8NDQ6 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC16.38■□□□□ 0.21
ZNF540Q8NDQ6 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC16.38■□□□□ 0.21
ZNF540Q8NDQ6 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC16.38■□□□□ 0.21
ZNF540Q8NDQ6 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
ZNF540Q8NDQ6 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC16.38■□□□□ 0.21
ZNF540Q8NDQ6 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
ZNF540Q8NDQ6 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
ZNF540Q8NDQ6 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
ZNF540Q8NDQ6 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
ZNF540Q8NDQ6 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
ZNF540Q8NDQ6 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
ZNF540Q8NDQ6 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
ZNF540Q8NDQ6 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
ZNF540Q8NDQ6 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
ZNF540Q8NDQ6 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC16.38■□□□□ 0.21
ZNF540Q8NDQ6 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC16.38■□□□□ 0.21
ZNF540Q8NDQ6 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
ZNF540Q8NDQ6 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC16.37■□□□□ 0.21
ZNF540Q8NDQ6 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
ZNF540Q8NDQ6 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
ZNF540Q8NDQ6 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
ZNF540Q8NDQ6 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC16.37■□□□□ 0.21
ZNF540Q8NDQ6 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
ZNF540Q8NDQ6 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
ZNF540Q8NDQ6 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC16.37■□□□□ 0.21
ZNF540Q8NDQ6 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
ZNF540Q8NDQ6 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC16.37■□□□□ 0.21
ZNF540Q8NDQ6 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
ZNF540Q8NDQ6 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
ZNF540Q8NDQ6 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
ZNF540Q8NDQ6 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
ZNF540Q8NDQ6 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
ZNF540Q8NDQ6 B3GAT3P1-201ENST00000471720 806 ntBASIC16.37■□□□□ 0.21
ZNF540Q8NDQ6 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC16.37■□□□□ 0.21
ZNF540Q8NDQ6 AC097488.1-201ENST00000507834 756 ntBASIC16.37■□□□□ 0.21
ZNF540Q8NDQ6 EGLN1P1-201ENST00000531623 762 ntBASIC16.37■□□□□ 0.21
ZNF540Q8NDQ6 RMI2-205ENST00000576027 818 ntTSL 2 BASIC16.37■□□□□ 0.21
ZNF540Q8NDQ6 CYGB-204ENST00000589342 815 ntTSL 3 BASIC16.37■□□□□ 0.21
ZNF540Q8NDQ6 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
ZNF540Q8NDQ6 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
ZNF540Q8NDQ6 AGGF1P2-201ENST00000426656 2106 ntBASIC16.37■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms