Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
USHBP1Q8N6Y0 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
USHBP1Q8N6Y0 CNN2P11-201ENST00000429351 262 ntBASIC23.12■■□□□ 1.29
USHBP1Q8N6Y0 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC23.12■■□□□ 1.29
USHBP1Q8N6Y0 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC23.12■■□□□ 1.29
USHBP1Q8N6Y0 PDPK2P-202ENST00000562415 1191 ntBASIC23.12■■□□□ 1.29
USHBP1Q8N6Y0 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC23.12■■□□□ 1.29
USHBP1Q8N6Y0 AQP6-205ENST00000618286 829 ntTSL 5 BASIC23.12■■□□□ 1.29
USHBP1Q8N6Y0 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC23.12■■□□□ 1.29
USHBP1Q8N6Y0 AC004408.2-201ENST00000623613 2777 ntBASIC23.12■■□□□ 1.29
USHBP1Q8N6Y0 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
USHBP1Q8N6Y0 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
USHBP1Q8N6Y0 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC23.12■■□□□ 1.29
USHBP1Q8N6Y0 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC23.12■■□□□ 1.29
USHBP1Q8N6Y0 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC23.12■■□□□ 1.29
USHBP1Q8N6Y0 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC23.12■■□□□ 1.29
USHBP1Q8N6Y0 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC23.11■■□□□ 1.29
USHBP1Q8N6Y0 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC23.11■■□□□ 1.29
USHBP1Q8N6Y0 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
USHBP1Q8N6Y0 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
USHBP1Q8N6Y0 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC23.11■■□□□ 1.29
USHBP1Q8N6Y0 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
USHBP1Q8N6Y0 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
USHBP1Q8N6Y0 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC23.11■■□□□ 1.29
USHBP1Q8N6Y0 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC23.11■■□□□ 1.29
USHBP1Q8N6Y0 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC23.11■■□□□ 1.29
USHBP1Q8N6Y0 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC23.11■■□□□ 1.29
USHBP1Q8N6Y0 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC23.11■■□□□ 1.29
USHBP1Q8N6Y0 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC23.11■■□□□ 1.29
USHBP1Q8N6Y0 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
USHBP1Q8N6Y0 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC23.11■■□□□ 1.29
USHBP1Q8N6Y0 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC23.11■■□□□ 1.29
USHBP1Q8N6Y0 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
USHBP1Q8N6Y0 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC23.1■■□□□ 1.29
USHBP1Q8N6Y0 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC23.1■■□□□ 1.29
USHBP1Q8N6Y0 AC025580.3-201ENST00000617932 1424 ntBASIC23.1■■□□□ 1.29
USHBP1Q8N6Y0 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC23.1■■□□□ 1.29
USHBP1Q8N6Y0 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC23.1■■□□□ 1.29
USHBP1Q8N6Y0 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
USHBP1Q8N6Y0 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC23.1■■□□□ 1.29
USHBP1Q8N6Y0 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
USHBP1Q8N6Y0 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
USHBP1Q8N6Y0 AP002414.1-201ENST00000391405 1147 ntBASIC23.1■■□□□ 1.29
USHBP1Q8N6Y0 AC254562.1-201ENST00000417586 456 ntBASIC23.1■■□□□ 1.29
USHBP1Q8N6Y0 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
USHBP1Q8N6Y0 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
USHBP1Q8N6Y0 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC23.1■■□□□ 1.29
USHBP1Q8N6Y0 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
USHBP1Q8N6Y0 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC23.1■■□□□ 1.29
USHBP1Q8N6Y0 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC23.1■■□□□ 1.29
USHBP1Q8N6Y0 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC23.1■■□□□ 1.29
USHBP1Q8N6Y0 AC027612.4-201ENST00000605371 583 ntBASIC23.1■■□□□ 1.29
USHBP1Q8N6Y0 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC23.1■■□□□ 1.29
USHBP1Q8N6Y0 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
USHBP1Q8N6Y0 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
USHBP1Q8N6Y0 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
USHBP1Q8N6Y0 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
USHBP1Q8N6Y0 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
USHBP1Q8N6Y0 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC23.09■■□□□ 1.29
USHBP1Q8N6Y0 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
USHBP1Q8N6Y0 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
USHBP1Q8N6Y0 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
USHBP1Q8N6Y0 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC23.09■■□□□ 1.29
USHBP1Q8N6Y0 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC23.09■■□□□ 1.29
USHBP1Q8N6Y0 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC23.09■■□□□ 1.29
USHBP1Q8N6Y0 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
USHBP1Q8N6Y0 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
USHBP1Q8N6Y0 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
USHBP1Q8N6Y0 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
USHBP1Q8N6Y0 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC23.09■■□□□ 1.29
USHBP1Q8N6Y0 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
USHBP1Q8N6Y0 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
USHBP1Q8N6Y0 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC23.09■■□□□ 1.29
USHBP1Q8N6Y0 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
USHBP1Q8N6Y0 AC002558.1-201ENST00000488906 803 ntBASIC23.09■■□□□ 1.29
USHBP1Q8N6Y0 RFPL4AP1-201ENST00000530883 850 ntBASIC23.09■■□□□ 1.29
USHBP1Q8N6Y0 PUS1-205ENST00000535067 838 ntTSL 3 BASIC23.09■■□□□ 1.29
USHBP1Q8N6Y0 AC096734.2-201ENST00000562054 433 ntBASIC23.09■■□□□ 1.29
USHBP1Q8N6Y0 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
USHBP1Q8N6Y0 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC23.09■■□□□ 1.29
USHBP1Q8N6Y0 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC23.09■■□□□ 1.29
USHBP1Q8N6Y0 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC23.09■■□□□ 1.29
USHBP1Q8N6Y0 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
USHBP1Q8N6Y0 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC23.09■■□□□ 1.29
USHBP1Q8N6Y0 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
USHBP1Q8N6Y0 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC23.09■■□□□ 1.29
USHBP1Q8N6Y0 PODN-203ENST00000395871 2744 ntTSL 5 BASIC23.09■■□□□ 1.29
USHBP1Q8N6Y0 PXK-206ENST00000463280 2825 ntTSL 2 BASIC23.09■■□□□ 1.29
USHBP1Q8N6Y0 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
USHBP1Q8N6Y0 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
USHBP1Q8N6Y0 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC23.08■■□□□ 1.29
USHBP1Q8N6Y0 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
USHBP1Q8N6Y0 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
USHBP1Q8N6Y0 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
USHBP1Q8N6Y0 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC23.08■■□□□ 1.29
USHBP1Q8N6Y0 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC23.08■■□□□ 1.29
USHBP1Q8N6Y0 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC23.08■■□□□ 1.29
USHBP1Q8N6Y0 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC23.08■■□□□ 1.29
USHBP1Q8N6Y0 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC23.08■■□□□ 1.29
USHBP1Q8N6Y0 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC23.08■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms