Protein–RNA interactions for Protein: Q8N3P4

VPS8, Vacuolar protein sorting-associated protein 8 homolog, humanhuman

Predictions only

Length 1,428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS8Q8N3P4 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC27.42■■□□□ 1.98
VPS8Q8N3P4 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC27.42■■□□□ 1.98
VPS8Q8N3P4 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC27.42■■□□□ 1.98
VPS8Q8N3P4 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC27.42■■□□□ 1.98
VPS8Q8N3P4 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC27.41■■□□□ 1.98
VPS8Q8N3P4 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC27.41■■□□□ 1.98
VPS8Q8N3P4 Z83851.2-201ENST00000609564 659 ntBASIC27.41■■□□□ 1.98
VPS8Q8N3P4 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC27.41■■□□□ 1.98
VPS8Q8N3P4 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC27.41■■□□□ 1.98
VPS8Q8N3P4 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC27.41■■□□□ 1.98
VPS8Q8N3P4 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC27.41■■□□□ 1.98
VPS8Q8N3P4 AL138688.1-201ENST00000624851 1594 ntBASIC27.41■■□□□ 1.98
VPS8Q8N3P4 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC27.41■■□□□ 1.98
VPS8Q8N3P4 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC27.41■■□□□ 1.98
VPS8Q8N3P4 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC27.41■■□□□ 1.98
VPS8Q8N3P4 RNA5SP415-201ENST00000517246 115 ntBASIC27.41■■□□□ 1.98
VPS8Q8N3P4 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC27.41■■□□□ 1.98
VPS8Q8N3P4 RIN3-211ENST00000557762 517 ntTSL 3 BASIC27.41■■□□□ 1.98
VPS8Q8N3P4 AC106730.1-201ENST00000566722 1090 ntBASIC27.41■■□□□ 1.98
VPS8Q8N3P4 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC27.41■■□□□ 1.98
VPS8Q8N3P4 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC27.41■■□□□ 1.98
VPS8Q8N3P4 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC27.41■■□□□ 1.98
VPS8Q8N3P4 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC27.4■■□□□ 1.98
VPS8Q8N3P4 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC27.4■■□□□ 1.98
VPS8Q8N3P4 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC27.4■■□□□ 1.98
VPS8Q8N3P4 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC27.4■■□□□ 1.98
VPS8Q8N3P4 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC27.4■■□□□ 1.98
VPS8Q8N3P4 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC27.4■■□□□ 1.98
VPS8Q8N3P4 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC27.4■■□□□ 1.98
VPS8Q8N3P4 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC27.4■■□□□ 1.98
VPS8Q8N3P4 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC27.4■■□□□ 1.98
VPS8Q8N3P4 AC009947.1-201ENST00000444350 727 ntBASIC27.4■■□□□ 1.98
VPS8Q8N3P4 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC27.4■■□□□ 1.98
VPS8Q8N3P4 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC27.4■■□□□ 1.98
VPS8Q8N3P4 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC27.4■■□□□ 1.98
VPS8Q8N3P4 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC27.4■■□□□ 1.98
VPS8Q8N3P4 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC27.4■■□□□ 1.98
VPS8Q8N3P4 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC27.39■■□□□ 1.98
VPS8Q8N3P4 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC27.39■■□□□ 1.98
VPS8Q8N3P4 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.98
VPS8Q8N3P4 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC27.39■■□□□ 1.98
VPS8Q8N3P4 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC27.39■■□□□ 1.98
VPS8Q8N3P4 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC27.39■■□□□ 1.98
VPS8Q8N3P4 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.97
VPS8Q8N3P4 INIP-202ENST00000374236 874 ntTSL 2 BASIC27.39■■□□□ 1.97
VPS8Q8N3P4 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC27.39■■□□□ 1.97
VPS8Q8N3P4 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC27.39■■□□□ 1.97
VPS8Q8N3P4 UNC93B6-202ENST00000528242 690 ntBASIC27.39■■□□□ 1.97
VPS8Q8N3P4 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC27.39■■□□□ 1.97
VPS8Q8N3P4 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC27.39■■□□□ 1.97
VPS8Q8N3P4 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC27.39■■□□□ 1.97
VPS8Q8N3P4 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.97
VPS8Q8N3P4 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC27.39■■□□□ 1.97
VPS8Q8N3P4 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC27.39■■□□□ 1.97
VPS8Q8N3P4 AL590787.1-201ENST00000568856 1315 ntBASIC27.39■■□□□ 1.97
VPS8Q8N3P4 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC27.39■■□□□ 1.97
VPS8Q8N3P4 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC27.39■■□□□ 1.97
VPS8Q8N3P4 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC27.39■■□□□ 1.97
VPS8Q8N3P4 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC27.39■■□□□ 1.97
VPS8Q8N3P4 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC27.38■■□□□ 1.97
VPS8Q8N3P4 LBH-204ENST00000406087 559 ntTSL 4 BASIC27.38■■□□□ 1.97
VPS8Q8N3P4 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC27.38■■□□□ 1.97
VPS8Q8N3P4 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC27.38■■□□□ 1.97
VPS8Q8N3P4 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC27.38■■□□□ 1.97
VPS8Q8N3P4 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC27.38■■□□□ 1.97
VPS8Q8N3P4 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC27.38■■□□□ 1.97
VPS8Q8N3P4 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC27.38■■□□□ 1.97
VPS8Q8N3P4 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC27.38■■□□□ 1.97
VPS8Q8N3P4 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC27.38■■□□□ 1.97
VPS8Q8N3P4 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC27.38■■□□□ 1.97
VPS8Q8N3P4 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC27.38■■□□□ 1.97
VPS8Q8N3P4 AC067852.2-201ENST00000590513 2313 ntBASIC27.38■■□□□ 1.97
VPS8Q8N3P4 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC27.38■■□□□ 1.97
VPS8Q8N3P4 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC27.38■■□□□ 1.97
VPS8Q8N3P4 AC104109.2-201ENST00000602919 1418 ntBASIC27.38■■□□□ 1.97
VPS8Q8N3P4 AF228730.7-201ENST00000641842 219 ntBASIC27.38■■□□□ 1.97
VPS8Q8N3P4 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC27.37■■□□□ 1.97
VPS8Q8N3P4 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC27.37■■□□□ 1.97
VPS8Q8N3P4 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC27.37■■□□□ 1.97
VPS8Q8N3P4 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC27.37■■□□□ 1.97
VPS8Q8N3P4 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC27.37■■□□□ 1.97
VPS8Q8N3P4 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC27.37■■□□□ 1.97
VPS8Q8N3P4 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC27.37■■□□□ 1.97
VPS8Q8N3P4 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC27.37■■□□□ 1.97
VPS8Q8N3P4 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC27.37■■□□□ 1.97
VPS8Q8N3P4 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC27.37■■□□□ 1.97
VPS8Q8N3P4 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC27.37■■□□□ 1.97
VPS8Q8N3P4 AC108073.2-201ENST00000464002 357 ntBASIC27.37■■□□□ 1.97
VPS8Q8N3P4 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC27.37■■□□□ 1.97
VPS8Q8N3P4 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC27.37■■□□□ 1.97
VPS8Q8N3P4 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
VPS8Q8N3P4 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC27.37■■□□□ 1.97
VPS8Q8N3P4 MIR1199-201ENST00000621445 119 ntBASIC27.37■■□□□ 1.97
VPS8Q8N3P4 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
VPS8Q8N3P4 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
VPS8Q8N3P4 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC27.36■■□□□ 1.97
VPS8Q8N3P4 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC27.36■■□□□ 1.97
VPS8Q8N3P4 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC27.36■■□□□ 1.97
VPS8Q8N3P4 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
VPS8Q8N3P4 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC27.36■■□□□ 1.97
Retrieved 100 of 98,524 protein–RNA pairs in 75 ms