Protein–RNA interactions for Protein: Q8IWZ4

TRIM48, Tripartite motif-containing protein 48, humanhuman

Predictions only

Length 208 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM48Q8IWZ4 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TRIM48Q8IWZ4 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC17.33■□□□□ 0.36
TRIM48Q8IWZ4 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
TRIM48Q8IWZ4 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
TRIM48Q8IWZ4 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
TRIM48Q8IWZ4 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
TRIM48Q8IWZ4 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
TRIM48Q8IWZ4 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC17.33■□□□□ 0.36
TRIM48Q8IWZ4 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
TRIM48Q8IWZ4 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC17.33■□□□□ 0.36
TRIM48Q8IWZ4 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
TRIM48Q8IWZ4 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM48Q8IWZ4 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
TRIM48Q8IWZ4 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
TRIM48Q8IWZ4 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC17.32■□□□□ 0.36
TRIM48Q8IWZ4 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC17.32■□□□□ 0.36
TRIM48Q8IWZ4 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM48Q8IWZ4 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
TRIM48Q8IWZ4 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC17.32■□□□□ 0.36
TRIM48Q8IWZ4 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM48Q8IWZ4 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM48Q8IWZ4 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM48Q8IWZ4 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC17.32■□□□□ 0.36
TRIM48Q8IWZ4 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
TRIM48Q8IWZ4 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM48Q8IWZ4 AC097374.2-201ENST00000618617 1306 ntBASIC17.32■□□□□ 0.36
TRIM48Q8IWZ4 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC17.32■□□□□ 0.36
TRIM48Q8IWZ4 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM48Q8IWZ4 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC17.32■□□□□ 0.36
TRIM48Q8IWZ4 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM48Q8IWZ4 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC17.32■□□□□ 0.36
TRIM48Q8IWZ4 AC007967.3-201ENST00000434308 558 ntBASIC17.32■□□□□ 0.36
TRIM48Q8IWZ4 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC17.32■□□□□ 0.36
TRIM48Q8IWZ4 AL160237.2-201ENST00000556165 472 ntBASIC17.32■□□□□ 0.36
TRIM48Q8IWZ4 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC17.32■□□□□ 0.36
TRIM48Q8IWZ4 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC17.32■□□□□ 0.36
TRIM48Q8IWZ4 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC17.32■□□□□ 0.36
TRIM48Q8IWZ4 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM48Q8IWZ4 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC17.32■□□□□ 0.36
TRIM48Q8IWZ4 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC17.32■□□□□ 0.36
TRIM48Q8IWZ4 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM48Q8IWZ4 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM48Q8IWZ4 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM48Q8IWZ4 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM48Q8IWZ4 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM48Q8IWZ4 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM48Q8IWZ4 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TRIM48Q8IWZ4 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
TRIM48Q8IWZ4 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC17.31■□□□□ 0.36
TRIM48Q8IWZ4 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM48Q8IWZ4 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC17.31■□□□□ 0.36
TRIM48Q8IWZ4 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM48Q8IWZ4 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
TRIM48Q8IWZ4 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM48Q8IWZ4 AC009113.1-201ENST00000570267 2443 ntBASIC17.31■□□□□ 0.36
TRIM48Q8IWZ4 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM48Q8IWZ4 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC17.31■□□□□ 0.36
TRIM48Q8IWZ4 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM48Q8IWZ4 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM48Q8IWZ4 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM48Q8IWZ4 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC17.31■□□□□ 0.36
TRIM48Q8IWZ4 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM48Q8IWZ4 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM48Q8IWZ4 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM48Q8IWZ4 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM48Q8IWZ4 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM48Q8IWZ4 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM48Q8IWZ4 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM48Q8IWZ4 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM48Q8IWZ4 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM48Q8IWZ4 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM48Q8IWZ4 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC17.31■□□□□ 0.36
TRIM48Q8IWZ4 COX5A-202ENST00000562233 441 ntTSL 3 BASIC17.31■□□□□ 0.36
TRIM48Q8IWZ4 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC17.31■□□□□ 0.36
TRIM48Q8IWZ4 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC17.31■□□□□ 0.36
TRIM48Q8IWZ4 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM48Q8IWZ4 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC17.31■□□□□ 0.36
TRIM48Q8IWZ4 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM48Q8IWZ4 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM48Q8IWZ4 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC17.31■□□□□ 0.36
TRIM48Q8IWZ4 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM48Q8IWZ4 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM48Q8IWZ4 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC17.31■□□□□ 0.36
TRIM48Q8IWZ4 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM48Q8IWZ4 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM48Q8IWZ4 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM48Q8IWZ4 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC17.31■□□□□ 0.36
TRIM48Q8IWZ4 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM48Q8IWZ4 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRIM48Q8IWZ4 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC17.3■□□□□ 0.36
TRIM48Q8IWZ4 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC17.3■□□□□ 0.36
TRIM48Q8IWZ4 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
TRIM48Q8IWZ4 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC17.3■□□□□ 0.36
TRIM48Q8IWZ4 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
TRIM48Q8IWZ4 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC17.3■□□□□ 0.36
TRIM48Q8IWZ4 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
TRIM48Q8IWZ4 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
TRIM48Q8IWZ4 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRIM48Q8IWZ4 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRIM48Q8IWZ4 MED16-201ENST00000269814 1199 ntTSL 5 BASIC17.3■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms