Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
LINC00643Q86TS7 CHRNA7-201ENST00000306901 6181 ntAPPRIS P3 TSL 1 (best) BASIC10.98□□□□□ -0.65
LINC00643Q86TS7 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC10.98□□□□□ -0.65
LINC00643Q86TS7 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC10.98□□□□□ -0.65
LINC00643Q86TS7 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC10.98□□□□□ -0.65
LINC00643Q86TS7 FYTTD1-201ENST00000241502 6866 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
LINC00643Q86TS7 RPGRIP1-210ENST00000556336 2955 ntTSL 5 BASIC10.98□□□□□ -0.65
LINC00643Q86TS7 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
LINC00643Q86TS7 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
LINC00643Q86TS7 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
LINC00643Q86TS7 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC10.98□□□□□ -0.65
LINC00643Q86TS7 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
LINC00643Q86TS7 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC10.98□□□□□ -0.65
LINC00643Q86TS7 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC10.98□□□□□ -0.65
LINC00643Q86TS7 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC10.98□□□□□ -0.65
LINC00643Q86TS7 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC10.98□□□□□ -0.65
LINC00643Q86TS7 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
LINC00643Q86TS7 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC10.98□□□□□ -0.65
LINC00643Q86TS7 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC10.98□□□□□ -0.65
LINC00643Q86TS7 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC10.98□□□□□ -0.65
LINC00643Q86TS7 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC10.98□□□□□ -0.65
LINC00643Q86TS7 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC10.98□□□□□ -0.65
LINC00643Q86TS7 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC10.98□□□□□ -0.65
LINC00643Q86TS7 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC10.98□□□□□ -0.65
LINC00643Q86TS7 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC10.98□□□□□ -0.65
LINC00643Q86TS7 EPHX2-207ENST00000521400 3140 ntAPPRIS P2 TSL 1 (best) BASIC10.98□□□□□ -0.65
LINC00643Q86TS7 KMT2E-201ENST00000257745 6714 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
LINC00643Q86TS7 IL17RA-204ENST00000612619 8506 ntAPPRIS ALT2 TSL 5 BASIC10.98□□□□□ -0.65
LINC00643Q86TS7 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
LINC00643Q86TS7 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
LINC00643Q86TS7 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC10.98□□□□□ -0.65
LINC00643Q86TS7 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC10.98□□□□□ -0.65
LINC00643Q86TS7 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC10.98□□□□□ -0.65
LINC00643Q86TS7 ARMCX4-202ENST00000423738 7424 ntAPPRIS P1 TSL 5 BASIC10.98□□□□□ -0.65
LINC00643Q86TS7 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC10.98□□□□□ -0.65
LINC00643Q86TS7 AXL-201ENST00000301178 4737 ntAPPRIS P4 TSL 1 (best) BASIC10.98□□□□□ -0.65
LINC00643Q86TS7 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC10.98□□□□□ -0.65
LINC00643Q86TS7 GMCL1P1-201ENST00000463439 1581 ntBASIC10.98□□□□□ -0.65
LINC00643Q86TS7 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC10.98□□□□□ -0.65
LINC00643Q86TS7 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC10.98□□□□□ -0.65
LINC00643Q86TS7 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC10.98□□□□□ -0.65
LINC00643Q86TS7 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC10.98□□□□□ -0.65
LINC00643Q86TS7 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
LINC00643Q86TS7 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC10.98□□□□□ -0.65
LINC00643Q86TS7 PHGDH-209ENST00000641074 1780 ntBASIC10.98□□□□□ -0.65
LINC00643Q86TS7 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
LINC00643Q86TS7 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC10.97□□□□□ -0.65
LINC00643Q86TS7 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
LINC00643Q86TS7 GAD2-203ENST00000376261 5858 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
LINC00643Q86TS7 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
LINC00643Q86TS7 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC10.97□□□□□ -0.65
LINC00643Q86TS7 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
LINC00643Q86TS7 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC10.97□□□□□ -0.65
LINC00643Q86TS7 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
LINC00643Q86TS7 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC10.97□□□□□ -0.65
LINC00643Q86TS7 DENND1B-211ENST00000620048 8378 ntAPPRIS ALT2 TSL 5 BASIC10.97□□□□□ -0.65
LINC00643Q86TS7 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
LINC00643Q86TS7 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
LINC00643Q86TS7 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC10.97□□□□□ -0.65
LINC00643Q86TS7 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC10.97□□□□□ -0.65
LINC00643Q86TS7 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC10.97□□□□□ -0.65
LINC00643Q86TS7 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC10.97□□□□□ -0.65
LINC00643Q86TS7 ITGB4-203ENST00000450894 5645 ntAPPRIS ALT2 TSL 1 (best) BASIC10.97□□□□□ -0.65
LINC00643Q86TS7 PURA-201ENST00000331327 11497 ntAPPRIS P1 BASIC10.97□□□□□ -0.65
LINC00643Q86TS7 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
LINC00643Q86TS7 AC097381.1-201ENST00000429019 1296 ntBASIC10.97□□□□□ -0.65
LINC00643Q86TS7 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC10.97□□□□□ -0.65
LINC00643Q86TS7 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC10.97□□□□□ -0.65
LINC00643Q86TS7 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC10.97□□□□□ -0.65
LINC00643Q86TS7 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC10.97□□□□□ -0.65
LINC00643Q86TS7 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
LINC00643Q86TS7 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC10.97□□□□□ -0.65
LINC00643Q86TS7 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC10.97□□□□□ -0.65
LINC00643Q86TS7 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
LINC00643Q86TS7 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC10.97□□□□□ -0.65
LINC00643Q86TS7 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC10.97□□□□□ -0.65
LINC00643Q86TS7 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
LINC00643Q86TS7 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC10.97□□□□□ -0.65
LINC00643Q86TS7 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC10.97□□□□□ -0.65
LINC00643Q86TS7 AC010247.2-201ENST00000559786 1955 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
LINC00643Q86TS7 PHLDB2-203ENST00000412622 5996 ntTSL 5 BASIC10.97□□□□□ -0.65
LINC00643Q86TS7 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC10.97□□□□□ -0.65
LINC00643Q86TS7 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
LINC00643Q86TS7 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC10.97□□□□□ -0.65
LINC00643Q86TS7 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
LINC00643Q86TS7 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC10.97□□□□□ -0.65
LINC00643Q86TS7 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
LINC00643Q86TS7 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
LINC00643Q86TS7 TOMM40L-201ENST00000367987 2636 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
LINC00643Q86TS7 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
LINC00643Q86TS7 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC10.97□□□□□ -0.65
LINC00643Q86TS7 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
LINC00643Q86TS7 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
LINC00643Q86TS7 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC10.97□□□□□ -0.65
LINC00643Q86TS7 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
LINC00643Q86TS7 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
LINC00643Q86TS7 ING5-213ENST00000636051 4199 ntTSL 5 BASIC10.96□□□□□ -0.65
LINC00643Q86TS7 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
LINC00643Q86TS7 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC10.96□□□□□ -0.65
LINC00643Q86TS7 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC10.96□□□□□ -0.65
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms