Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC17.93■□□□□ 0.46
USP39Q53GS9 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
USP39Q53GS9 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
USP39Q53GS9 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
USP39Q53GS9 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
USP39Q53GS9 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
USP39Q53GS9 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
USP39Q53GS9 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
USP39Q53GS9 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
USP39Q53GS9 PMP22-202ENST00000395936 816 ntTSL 3 BASIC17.93■□□□□ 0.46
USP39Q53GS9 PMS2P2-201ENST00000425039 1128 ntBASIC17.93■□□□□ 0.46
USP39Q53GS9 LAGE3P1-201ENST00000425356 484 ntBASIC17.93■□□□□ 0.46
USP39Q53GS9 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
USP39Q53GS9 FIS1-203ENST00000442303 631 ntTSL 3 BASIC17.93■□□□□ 0.46
USP39Q53GS9 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC17.93■□□□□ 0.46
USP39Q53GS9 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
USP39Q53GS9 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
USP39Q53GS9 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC17.93■□□□□ 0.46
USP39Q53GS9 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC17.93■□□□□ 0.46
USP39Q53GS9 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
USP39Q53GS9 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
USP39Q53GS9 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
USP39Q53GS9 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
USP39Q53GS9 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
USP39Q53GS9 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
USP39Q53GS9 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
USP39Q53GS9 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
USP39Q53GS9 LINC01126-201ENST00000623515 1646 ntBASIC17.92■□□□□ 0.46
USP39Q53GS9 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
USP39Q53GS9 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
USP39Q53GS9 BEX3-201ENST00000361298 921 ntTSL 2 BASIC17.92■□□□□ 0.46
USP39Q53GS9 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
USP39Q53GS9 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
USP39Q53GS9 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
USP39Q53GS9 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC17.92■□□□□ 0.46
USP39Q53GS9 CENPM-204ENST00000402420 688 ntTSL 5 BASIC17.92■□□□□ 0.46
USP39Q53GS9 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
USP39Q53GS9 RPS29-206ENST00000557111 488 ntTSL 2 BASIC17.92■□□□□ 0.46
USP39Q53GS9 RNF151-202ENST00000569210 853 ntTSL 2 BASIC17.92■□□□□ 0.46
USP39Q53GS9 AC002347.1-201ENST00000569543 541 ntBASIC17.92■□□□□ 0.46
USP39Q53GS9 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
USP39Q53GS9 AP000867.4-201ENST00000641616 219 ntBASIC17.92■□□□□ 0.46
USP39Q53GS9 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC17.92■□□□□ 0.46
USP39Q53GS9 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
USP39Q53GS9 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
USP39Q53GS9 AP002414.3-201ENST00000589352 1468 ntBASIC17.92■□□□□ 0.46
USP39Q53GS9 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
USP39Q53GS9 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
USP39Q53GS9 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
USP39Q53GS9 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
USP39Q53GS9 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
USP39Q53GS9 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
USP39Q53GS9 TBC1D3P5-201ENST00000579401 1545 ntBASIC17.92■□□□□ 0.46
USP39Q53GS9 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
USP39Q53GS9 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
USP39Q53GS9 ABALON-201ENST00000629058 1903 ntBASIC17.92■□□□□ 0.46
USP39Q53GS9 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
USP39Q53GS9 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC17.91■□□□□ 0.46
USP39Q53GS9 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
USP39Q53GS9 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
USP39Q53GS9 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC17.91■□□□□ 0.46
USP39Q53GS9 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
USP39Q53GS9 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
USP39Q53GS9 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
USP39Q53GS9 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
USP39Q53GS9 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC17.91■□□□□ 0.46
USP39Q53GS9 KIRREL3-AS3-201ENST00000404882 831 ntBASIC17.91■□□□□ 0.46
USP39Q53GS9 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
USP39Q53GS9 URGCP-206ENST00000446958 365 ntTSL 2 BASIC17.91■□□□□ 0.46
USP39Q53GS9 AC004967.1-201ENST00000453589 447 ntBASIC17.91■□□□□ 0.46
USP39Q53GS9 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC17.91■□□□□ 0.46
USP39Q53GS9 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC17.91■□□□□ 0.46
USP39Q53GS9 MIR1199-201ENST00000621445 119 ntBASIC17.91■□□□□ 0.46
USP39Q53GS9 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
USP39Q53GS9 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
USP39Q53GS9 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
USP39Q53GS9 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
USP39Q53GS9 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
USP39Q53GS9 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
USP39Q53GS9 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
USP39Q53GS9 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC17.91■□□□□ 0.46
USP39Q53GS9 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
USP39Q53GS9 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
USP39Q53GS9 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
USP39Q53GS9 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
USP39Q53GS9 AC018470.1-201ENST00000624790 3129 ntBASIC17.9■□□□□ 0.46
USP39Q53GS9 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC17.9■□□□□ 0.46
USP39Q53GS9 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
USP39Q53GS9 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
USP39Q53GS9 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
USP39Q53GS9 AC026471.1-201ENST00000564629 3026 ntBASIC17.9■□□□□ 0.46
USP39Q53GS9 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC17.9■□□□□ 0.46
USP39Q53GS9 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC17.9■□□□□ 0.46
USP39Q53GS9 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
USP39Q53GS9 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
USP39Q53GS9 AC004832.2-201ENST00000426397 482 ntBASIC17.9■□□□□ 0.46
USP39Q53GS9 AC007967.2-201ENST00000432613 625 ntBASIC17.9■□□□□ 0.46
USP39Q53GS9 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
USP39Q53GS9 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC17.9■□□□□ 0.46
USP39Q53GS9 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC17.9■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms