Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CCDC144BQ3MJ40 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC20.48■□□□□ 0.87
CCDC144BQ3MJ40 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC20.48■□□□□ 0.87
CCDC144BQ3MJ40 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
CCDC144BQ3MJ40 AC018712.1-201ENST00000455767 687 ntBASIC20.48■□□□□ 0.87
CCDC144BQ3MJ40 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC20.48■□□□□ 0.87
CCDC144BQ3MJ40 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC20.48■□□□□ 0.87
CCDC144BQ3MJ40 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
CCDC144BQ3MJ40 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CCDC144BQ3MJ40 AL355877.3-201ENST00000622820 899 ntBASIC20.48■□□□□ 0.87
CCDC144BQ3MJ40 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CCDC144BQ3MJ40 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
CCDC144BQ3MJ40 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC20.48■□□□□ 0.87
CCDC144BQ3MJ40 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC20.48■□□□□ 0.87
CCDC144BQ3MJ40 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC20.48■□□□□ 0.87
CCDC144BQ3MJ40 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC20.48■□□□□ 0.87
CCDC144BQ3MJ40 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CCDC144BQ3MJ40 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CCDC144BQ3MJ40 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CCDC144BQ3MJ40 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC20.47■□□□□ 0.87
CCDC144BQ3MJ40 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CCDC144BQ3MJ40 AC112777.1-201ENST00000540175 1423 ntBASIC20.47■□□□□ 0.87
CCDC144BQ3MJ40 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CCDC144BQ3MJ40 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
CCDC144BQ3MJ40 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
CCDC144BQ3MJ40 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CCDC144BQ3MJ40 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CCDC144BQ3MJ40 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC20.47■□□□□ 0.87
CCDC144BQ3MJ40 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC20.47■□□□□ 0.87
CCDC144BQ3MJ40 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CCDC144BQ3MJ40 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC20.47■□□□□ 0.87
CCDC144BQ3MJ40 RNPS1P1-201ENST00000507437 918 ntBASIC20.47■□□□□ 0.87
CCDC144BQ3MJ40 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC20.47■□□□□ 0.87
CCDC144BQ3MJ40 COX5A-204ENST00000567270 579 ntTSL 3 BASIC20.47■□□□□ 0.87
CCDC144BQ3MJ40 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC20.47■□□□□ 0.87
CCDC144BQ3MJ40 AIRN-201ENST00000601203 4374 ntBASIC20.47■□□□□ 0.87
CCDC144BQ3MJ40 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CCDC144BQ3MJ40 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CCDC144BQ3MJ40 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CCDC144BQ3MJ40 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
CCDC144BQ3MJ40 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
CCDC144BQ3MJ40 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CCDC144BQ3MJ40 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC20.47■□□□□ 0.87
CCDC144BQ3MJ40 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC144BQ3MJ40 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC144BQ3MJ40 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC144BQ3MJ40 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC20.46■□□□□ 0.87
CCDC144BQ3MJ40 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC144BQ3MJ40 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC144BQ3MJ40 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC144BQ3MJ40 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC144BQ3MJ40 MED16-201ENST00000269814 1199 ntTSL 5 BASIC20.46■□□□□ 0.87
CCDC144BQ3MJ40 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC144BQ3MJ40 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
CCDC144BQ3MJ40 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC144BQ3MJ40 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC20.46■□□□□ 0.87
CCDC144BQ3MJ40 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC20.46■□□□□ 0.87
CCDC144BQ3MJ40 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC144BQ3MJ40 FGFR3P6-201ENST00000457012 610 ntBASIC20.46■□□□□ 0.87
CCDC144BQ3MJ40 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
CCDC144BQ3MJ40 AC093909.1-201ENST00000504731 1122 ntBASIC20.46■□□□□ 0.87
CCDC144BQ3MJ40 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC20.46■□□□□ 0.87
CCDC144BQ3MJ40 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC144BQ3MJ40 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC20.46■□□□□ 0.87
CCDC144BQ3MJ40 AL049840.3-201ENST00000602669 611 ntBASIC20.46■□□□□ 0.87
CCDC144BQ3MJ40 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC20.46■□□□□ 0.87
CCDC144BQ3MJ40 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC144BQ3MJ40 AC084018.2-201ENST00000613093 2607 ntBASIC20.46■□□□□ 0.87
CCDC144BQ3MJ40 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC144BQ3MJ40 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC20.46■□□□□ 0.87
CCDC144BQ3MJ40 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC144BQ3MJ40 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC144BQ3MJ40 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
CCDC144BQ3MJ40 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC144BQ3MJ40 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.87
CCDC144BQ3MJ40 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CCDC144BQ3MJ40 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC20.45■□□□□ 0.86
CCDC144BQ3MJ40 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CCDC144BQ3MJ40 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC20.45■□□□□ 0.86
CCDC144BQ3MJ40 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CCDC144BQ3MJ40 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
CCDC144BQ3MJ40 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CCDC144BQ3MJ40 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CCDC144BQ3MJ40 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
CCDC144BQ3MJ40 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CCDC144BQ3MJ40 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC20.45■□□□□ 0.86
CCDC144BQ3MJ40 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC20.45■□□□□ 0.86
CCDC144BQ3MJ40 HIST2H3DP1-201ENST00000401004 416 ntBASIC20.45■□□□□ 0.86
CCDC144BQ3MJ40 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC20.45■□□□□ 0.86
CCDC144BQ3MJ40 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC20.45■□□□□ 0.86
CCDC144BQ3MJ40 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
CCDC144BQ3MJ40 GZMM-202ENST00000592501 941 ntTSL 3 BASIC20.45■□□□□ 0.86
CCDC144BQ3MJ40 MTDHP3-201ENST00000594186 672 ntBASIC20.45■□□□□ 0.86
CCDC144BQ3MJ40 AC009154.2-201ENST00000621177 724 ntBASIC20.45■□□□□ 0.86
CCDC144BQ3MJ40 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC20.45■□□□□ 0.86
CCDC144BQ3MJ40 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC20.45■□□□□ 0.86
CCDC144BQ3MJ40 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CCDC144BQ3MJ40 AC124067.4-201ENST00000519691 2379 ntBASIC20.45■□□□□ 0.86
CCDC144BQ3MJ40 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CCDC144BQ3MJ40 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC20.45■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 95.8 ms