Protein–RNA interactions for Protein: P78396

CCNA1, Cyclin-A1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1P78396 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
CCNA1P78396 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
CCNA1P78396 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
CCNA1P78396 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
CCNA1P78396 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC19.97■□□□□ 0.79
CCNA1P78396 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
CCNA1P78396 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
CCNA1P78396 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
CCNA1P78396 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CCNA1P78396 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC19.97■□□□□ 0.79
CCNA1P78396 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCNA1P78396 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC19.96■□□□□ 0.79
CCNA1P78396 PI4KAP1-204ENST00000612579 1703 ntBASIC19.96■□□□□ 0.79
CCNA1P78396 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC19.96■□□□□ 0.79
CCNA1P78396 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCNA1P78396 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC19.96■□□□□ 0.79
CCNA1P78396 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCNA1P78396 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCNA1P78396 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCNA1P78396 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCNA1P78396 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCNA1P78396 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC19.96■□□□□ 0.79
CCNA1P78396 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC19.96■□□□□ 0.79
CCNA1P78396 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC19.96■□□□□ 0.79
CCNA1P78396 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC19.96■□□□□ 0.79
CCNA1P78396 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCNA1P78396 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
CCNA1P78396 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
CCNA1P78396 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC19.96■□□□□ 0.79
CCNA1P78396 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
CCNA1P78396 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
CCNA1P78396 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
CCNA1P78396 POR-209ENST00000439269 1858 ntTSL 2 BASIC19.96■□□□□ 0.79
CCNA1P78396 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
CCNA1P78396 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
CCNA1P78396 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCNA1P78396 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC19.96■□□□□ 0.79
CCNA1P78396 HARS-201ENST00000307633 1780 ntTSL 2 BASIC19.95■□□□□ 0.78
CCNA1P78396 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
CCNA1P78396 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC19.95■□□□□ 0.78
CCNA1P78396 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC19.95■□□□□ 0.78
CCNA1P78396 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC19.95■□□□□ 0.78
CCNA1P78396 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC19.95■□□□□ 0.78
CCNA1P78396 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
CCNA1P78396 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CCNA1P78396 ACTG1P4-201ENST00000425123 1122 ntBASIC19.95■□□□□ 0.78
CCNA1P78396 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
CCNA1P78396 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC19.95■□□□□ 0.78
CCNA1P78396 METTL23-205ENST00000588302 925 ntTSL 5 BASIC19.95■□□□□ 0.78
CCNA1P78396 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC19.95■□□□□ 0.78
CCNA1P78396 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC19.95■□□□□ 0.78
CCNA1P78396 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
CCNA1P78396 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC19.95■□□□□ 0.78
CCNA1P78396 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
CCNA1P78396 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
CCNA1P78396 REM2-202ENST00000536884 1331 ntTSL 2 BASIC19.95■□□□□ 0.78
CCNA1P78396 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CCNA1P78396 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CCNA1P78396 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC19.95■□□□□ 0.78
CCNA1P78396 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
CCNA1P78396 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CCNA1P78396 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
CCNA1P78396 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
CCNA1P78396 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CCNA1P78396 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CCNA1P78396 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC19.94■□□□□ 0.78
CCNA1P78396 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC19.94■□□□□ 0.78
CCNA1P78396 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CCNA1P78396 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CCNA1P78396 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
CCNA1P78396 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC19.94■□□□□ 0.78
CCNA1P78396 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC19.94■□□□□ 0.78
CCNA1P78396 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
CCNA1P78396 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC19.94■□□□□ 0.78
CCNA1P78396 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC19.94■□□□□ 0.78
CCNA1P78396 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC19.94■□□□□ 0.78
CCNA1P78396 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC19.94■□□□□ 0.78
CCNA1P78396 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
CCNA1P78396 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC19.94■□□□□ 0.78
CCNA1P78396 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC19.94■□□□□ 0.78
CCNA1P78396 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC19.94■□□□□ 0.78
CCNA1P78396 CITED2-204ENST00000618718 901 ntTSL 2 BASIC19.94■□□□□ 0.78
CCNA1P78396 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
CCNA1P78396 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC19.94■□□□□ 0.78
CCNA1P78396 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
CCNA1P78396 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
CCNA1P78396 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CCNA1P78396 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
CCNA1P78396 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
CCNA1P78396 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC19.93■□□□□ 0.78
CCNA1P78396 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CCNA1P78396 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC19.93■□□□□ 0.78
CCNA1P78396 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CCNA1P78396 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CCNA1P78396 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
CCNA1P78396 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC19.93■□□□□ 0.78
CCNA1P78396 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CCNA1P78396 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CCNA1P78396 CXCL1P1-201ENST00000502804 216 ntBASIC19.93■□□□□ 0.78
CCNA1P78396 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC19.93■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 52.4 ms