Protein–RNA interactions for Protein: P61011

SRP54, Signal recognition particle 54 kDa protein, humanhuman

Known RBP Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54P61011 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
SRP54P61011 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC17.4■□□□□ 0.38
SRP54P61011 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
SRP54P61011 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC17.4■□□□□ 0.38
SRP54P61011 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
SRP54P61011 MTDHP4-201ENST00000600287 670 ntBASIC17.4■□□□□ 0.38
SRP54P61011 AC025062.2-201ENST00000605477 670 ntBASIC17.4■□□□□ 0.38
SRP54P61011 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC17.4■□□□□ 0.38
SRP54P61011 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
SRP54P61011 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC17.4■□□□□ 0.38
SRP54P61011 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SRP54P61011 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
SRP54P61011 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SRP54P61011 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SRP54P61011 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SRP54P61011 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SRP54P61011 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC17.4■□□□□ 0.38
SRP54P61011 AC100803.2-201ENST00000562459 1963 ntBASIC17.4■□□□□ 0.38
SRP54P61011 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SRP54P61011 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
SRP54P61011 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SRP54P61011 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
SRP54P61011 AC079776.2-201ENST00000641154 1609 ntBASIC17.39■□□□□ 0.38
SRP54P61011 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.38
SRP54P61011 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC17.39■□□□□ 0.38
SRP54P61011 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.38
SRP54P61011 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.38
SRP54P61011 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC17.39■□□□□ 0.37
SRP54P61011 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
SRP54P61011 OR6D1P-202ENST00000641007 5290 ntBASIC17.39■□□□□ 0.37
SRP54P61011 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SRP54P61011 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SRP54P61011 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
SRP54P61011 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC17.39■□□□□ 0.37
SRP54P61011 SIRPAP1-201ENST00000448467 1770 ntBASIC17.39■□□□□ 0.37
SRP54P61011 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC17.39■□□□□ 0.37
SRP54P61011 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
SRP54P61011 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC17.39■□□□□ 0.37
SRP54P61011 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC17.39■□□□□ 0.37
SRP54P61011 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
SRP54P61011 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SRP54P61011 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SRP54P61011 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC17.39■□□□□ 0.37
SRP54P61011 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC17.39■□□□□ 0.37
SRP54P61011 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC17.39■□□□□ 0.37
SRP54P61011 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
SRP54P61011 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC17.39■□□□□ 0.37
SRP54P61011 AC116407.3-201ENST00000623905 1129 ntBASIC17.39■□□□□ 0.37
SRP54P61011 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
SRP54P61011 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC17.39■□□□□ 0.37
SRP54P61011 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SRP54P61011 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
SRP54P61011 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
SRP54P61011 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC17.39■□□□□ 0.37
SRP54P61011 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SRP54P61011 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
SRP54P61011 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC17.39■□□□□ 0.37
SRP54P61011 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SRP54P61011 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SRP54P61011 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SRP54P61011 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SRP54P61011 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC17.38■□□□□ 0.37
SRP54P61011 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SRP54P61011 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SRP54P61011 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SRP54P61011 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC17.38■□□□□ 0.37
SRP54P61011 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC17.38■□□□□ 0.37
SRP54P61011 BX005266.1-201ENST00000473402 457 ntBASIC17.38■□□□□ 0.37
SRP54P61011 MSRA-206ENST00000521209 814 ntTSL 3 BASIC17.38■□□□□ 0.37
SRP54P61011 SLC25A1P1-201ENST00000528351 927 ntBASIC17.38■□□□□ 0.37
SRP54P61011 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC17.38■□□□□ 0.37
SRP54P61011 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC17.38■□□□□ 0.37
SRP54P61011 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC17.38■□□□□ 0.37
SRP54P61011 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SRP54P61011 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SRP54P61011 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
SRP54P61011 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC17.38■□□□□ 0.37
SRP54P61011 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
SRP54P61011 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SRP54P61011 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC17.38■□□□□ 0.37
SRP54P61011 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC17.38■□□□□ 0.37
SRP54P61011 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SRP54P61011 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SRP54P61011 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SRP54P61011 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SRP54P61011 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
SRP54P61011 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SRP54P61011 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
SRP54P61011 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SRP54P61011 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC17.37■□□□□ 0.37
SRP54P61011 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC17.37■□□□□ 0.37
SRP54P61011 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC17.37■□□□□ 0.37
SRP54P61011 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SRP54P61011 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC17.37■□□□□ 0.37
SRP54P61011 HLA-J-201ENST00000462773 1622 ntBASIC17.37■□□□□ 0.37
SRP54P61011 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SRP54P61011 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
SRP54P61011 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
SRP54P61011 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC17.37■□□□□ 0.37
SRP54P61011 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC17.37■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 43.5 ms