Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC17.08■□□□□ 0.33
FOXA1P55317 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
FOXA1P55317 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.33
FOXA1P55317 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
FOXA1P55317 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
FOXA1P55317 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
FOXA1P55317 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
FOXA1P55317 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
FOXA1P55317 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
FOXA1P55317 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
FOXA1P55317 DDT-203ENST00000403754 569 ntTSL 3 BASIC17.08■□□□□ 0.32
FOXA1P55317 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC17.08■□□□□ 0.32
FOXA1P55317 DDT-206ENST00000430101 573 ntTSL 2 BASIC17.08■□□□□ 0.32
FOXA1P55317 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
FOXA1P55317 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
FOXA1P55317 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
FOXA1P55317 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC17.08■□□□□ 0.32
FOXA1P55317 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC17.08■□□□□ 0.32
FOXA1P55317 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
FOXA1P55317 RNF126P1-202ENST00000569893 925 ntBASIC17.08■□□□□ 0.32
FOXA1P55317 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC17.08■□□□□ 0.32
FOXA1P55317 AC005332.3-201ENST00000589904 676 ntBASIC17.08■□□□□ 0.32
FOXA1P55317 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC17.08■□□□□ 0.32
FOXA1P55317 GPR32P1-201ENST00000601788 811 ntBASIC17.08■□□□□ 0.32
FOXA1P55317 AC006011.2-201ENST00000621313 1158 ntBASIC17.08■□□□□ 0.32
FOXA1P55317 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
FOXA1P55317 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
FOXA1P55317 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
FOXA1P55317 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC17.08■□□□□ 0.32
FOXA1P55317 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
FOXA1P55317 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
FOXA1P55317 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
FOXA1P55317 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC17.08■□□□□ 0.32
FOXA1P55317 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
FOXA1P55317 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
FOXA1P55317 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
FOXA1P55317 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
FOXA1P55317 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
FOXA1P55317 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC17.07■□□□□ 0.32
FOXA1P55317 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
FOXA1P55317 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
FOXA1P55317 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
FOXA1P55317 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
FOXA1P55317 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
FOXA1P55317 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC17.07■□□□□ 0.32
FOXA1P55317 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
FOXA1P55317 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
FOXA1P55317 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
FOXA1P55317 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
FOXA1P55317 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC17.07■□□□□ 0.32
FOXA1P55317 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
FOXA1P55317 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC17.07■□□□□ 0.32
FOXA1P55317 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
FOXA1P55317 TSPY5P-201ENST00000426936 936 ntBASIC17.07■□□□□ 0.32
FOXA1P55317 AC112907.2-201ENST00000448639 330 ntBASIC17.07■□□□□ 0.32
FOXA1P55317 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC17.07■□□□□ 0.32
FOXA1P55317 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC17.07■□□□□ 0.32
FOXA1P55317 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
FOXA1P55317 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
FOXA1P55317 FGF14-AS2-201ENST00000606448 1074 ntBASIC17.07■□□□□ 0.32
FOXA1P55317 AC073912.3-201ENST00000624414 853 ntBASIC17.07■□□□□ 0.32
FOXA1P55317 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC17.07■□□□□ 0.32
FOXA1P55317 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
FOXA1P55317 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
FOXA1P55317 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
FOXA1P55317 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
FOXA1P55317 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
FOXA1P55317 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
FOXA1P55317 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
FOXA1P55317 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
FOXA1P55317 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC17.06■□□□□ 0.32
FOXA1P55317 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC17.06■□□□□ 0.32
FOXA1P55317 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
FOXA1P55317 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC17.06■□□□□ 0.32
FOXA1P55317 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
FOXA1P55317 LINC01311-201ENST00000565162 1445 ntBASIC17.06■□□□□ 0.32
FOXA1P55317 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
FOXA1P55317 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
FOXA1P55317 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
FOXA1P55317 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
FOXA1P55317 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC17.06■□□□□ 0.32
FOXA1P55317 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
FOXA1P55317 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC17.06■□□□□ 0.32
FOXA1P55317 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
FOXA1P55317 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC17.06■□□□□ 0.32
FOXA1P55317 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC17.06■□□□□ 0.32
FOXA1P55317 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC17.06■□□□□ 0.32
FOXA1P55317 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC17.06■□□□□ 0.32
FOXA1P55317 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC17.06■□□□□ 0.32
FOXA1P55317 TMED1-207ENST00000591695 809 ntTSL 5 BASIC17.06■□□□□ 0.32
FOXA1P55317 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC17.06■□□□□ 0.32
FOXA1P55317 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC17.06■□□□□ 0.32
FOXA1P55317 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
FOXA1P55317 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
FOXA1P55317 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
FOXA1P55317 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC17.06■□□□□ 0.32
FOXA1P55317 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
FOXA1P55317 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
FOXA1P55317 AC010460.3-201ENST00000511359 1579 ntBASIC17.06■□□□□ 0.32
FOXA1P55317 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms